G331615


Basic Information

Item Value
gene id G331615
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1246291 ~ 1246573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376961
AAGTATTGTTGATCTGTTGTGTGTTTGTGTCTCTCTGTATTCATGCAGTAAAATGGCAGAAGCCAGGATTTCAGTGGATCAGAATGCGTTCACATGTCCAGTGTGTCTGGATCTCCTGAAGGATCCAGTGGCCATTCCCTGCGGACACAGTTACTGTAAGAGCTGTATTACAGGCTGCTGGGATCAGGAGGATGAGAAGAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376961 True 283 TUCP 0.48 1 1246291 1246573

Neighbor

gene id symbol gene type direction distance location
CI01000113_01127641_01134250 NA coding upstream 111810 1127641 ~ 1134481 (+)
CI01000113_01120464_01124821 NA coding upstream 121260 1120398 ~ 1125031 (+)
CI01000113_01110162_01112498 NA coding upstream 133789 1110162 ~ 1112502 (+)
CI01000113_01072283_01091398 NOTCH3 coding upstream 154561 1071905 ~ 1091730 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding upstream 240892 996863 ~ 1005399 (+)
CI01000113_01292096_01298082 NA coding downstream 45380 1291953 ~ 1299919 (+)
CI01000113_01321501_01326215 NA coding downstream 74783 1321356 ~ 1326350 (+)
CI01000113_01329811_01334714 LPAR2A coding downstream 82310 1328883 ~ 1334735 (+)
CI01000113_01376249_01385209 NA coding downstream 127494 1374067 ~ 1385402 (+)
CI01000113_01424978_01425704 NA coding downstream 178405 1424968 ~ 1425835 (+)
G331619 NA non-coding upstream 11161 1229103 ~ 1235130 (+)
G331652 NA non-coding upstream 40029 1205979 ~ 1206262 (+)
G331651 NA non-coding upstream 40414 1205587 ~ 1205877 (+)
G331647 NA non-coding upstream 43988 1202089 ~ 1202303 (+)
G331646 NA non-coding upstream 46662 1199396 ~ 1199629 (+)
G331590 NA non-coding downstream 3107 1249680 ~ 1251812 (+)
G331583 NA non-coding downstream 10615 1257188 ~ 1257858 (+)
G331661 NA non-coding downstream 29765 1276338 ~ 1278800 (+)
G331692 NA non-coding downstream 119245 1365818 ~ 1367922 (+)
G331702 NA non-coding downstream 142739 1389312 ~ 1389551 (+)
G331487 NA other upstream 324158 917735 ~ 922133 (+)
G331470 NA other upstream 329754 913392 ~ 916537 (+)
G331260 NA other upstream 911670 334158 ~ 334621 (+)
G331767 NA other downstream 416212 1662785 ~ 1663255 (+)
G331759 NA other downstream 421429 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1096848 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 1322194 2548934 ~ 2577790 (+)

Expression


Co-expression Network