G331661


Basic Information

Item Value
gene id G331661
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1276338 ~ 1278800 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU377007
TCCAACATTGATAATGGAGTATCAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACCGGAGTAATAATGCTGAAAATCCAACTTTGATCACAGAAATAAATTATGTTTTAATGTTTATTAAAATAGAAAACCATTATTTTAAATTGTGGTTATATTTCACAATATTACTGTTTTTTCTGTATTTTTGATCAAATGTGTATGTTATGGACTGGAGGAATGCACAGTGCATGCAGGGGGTGTGGCCTCAATAGCCCTGCAGTAAGTTGGGTGCTGTGTGAATGTCAGAGTAAAAATTCAACTGAAATTGCATTAAATCTGGTTGTTTTAACCAAAATTATGCAGCAAGATGTTTAACTAAATTTAAGTACCCTGTTATAGGCTAACCTGCAATTTTTCAAATTCCCTGTTTATTCCCATTAATTCCCATATATTCCCATTAATTCCCATATATTCACGTTAATTCCCATATATTCCCGTTAATTCCCATGGAAAGTTTCCAGCTTTGAAAATTCCCGGAATTTTGCAACCCTAGTTATAGCCTTTTTTTTTTTTTTTTAACACATAAATACCAACATTTTGATCCAGTTTATTTAAGTCACAAAAAAGTCGTAGTGATTTATTCTTCTGTATTGTGACATGTATCCTAGTGAAATGGATTATTGAAAAAGAAAGGCGGCAAGCACAGGGTGAGGACTTGCTTCTTTGCATGGGTTGTTGACTGGATGGAAGCAGATCTGAATGTGAGTTTAGAGTTGATTGTAAGAAAGGGGCAGAGTTTAAGCAGATGAAATGATTGGAGAACATTGTCATACGTCACCAAAGAGAAGTCTGTCATTTCACAGGAAGATCGAGCTTGATTATGATTGAGATTGATTAAAAATCACAAGAATAAAAACAAAAATAGATGTATTGAGATCAATAACATGCATTTGGAAAACAGAGTGAATGTTCATTTCATGCTAACTTTAATGTTGTAAAACCTGAATACGTAATTCTGCTGAGACCTAAAAACCAACTGTGCTCATCTGTTCATTATGTTTCTTAAATATTTTTCTAATTATATTTCTTAGTAAAATGAATAATTCTATTAGTAACTGGTTACTTAAAGGATTAGTTCATAATTTACTCACCCCTATGTCATCCAAGATGTTTAATTTCTTTTCACCTGAAGAAAGACAGACATGAACATCTTGGATGACATGGAGGCGAGTAAATTATCAGGAAATTTTTTATTCTGGAGTGAACTAATCCTTTAAATTCCATGAAAAAGCAAAGTCTACTACTTTGAATAATACACAAAGGCCATATTTTCAACAGCAGTTTTGTTTTGAAAATCTGTAGTGATGACAGCAGAAGTTCTCTGGCACTGGGATCAACTACTGAAATAGACAAAGAAAATTACATTTTGCTTTAGAAGTAAAAGACATACAGCTTGCAAATTTGCATTAGATGATGACTTTCTTTACTAAAAAGTAAAATAAGCCCCACAGTGTATTATGAGCTGAGTAATGACTAGTTTTACTTAGGTAAGATGATCATATATTTGTGCTTGAGTAGGGGAAAGAGAAAGGAAGAGCAAAGTGTAATCTCATCAACAGGACGTGCCCAGGTGACCCCACGACCAAATGAAAACCCATCACAGAGTACAGCTTATGTAGAGCTCAGCAGACAAACCATATTCGCTCCCGCGGACCATCCTGCATCTTCAGCCAGTTGTTTTTTGATTGAAGCATGTTAAAGGTCAGCCTGGTAATTGATACCAAAGGAAGGCCTAAATGTCTTTGCCTCTCTAGTAATCACACTCCCACCACTGCCTCGGCAATCTGGCAATCCCCGCACCTACACTTCCTGCTAATGAAACCTCATGTCACCTCATACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377007 True 1897 lncRNA 0.35 2 1276338 1278800

Neighbor

gene id symbol gene type direction distance location
CI01000113_01127641_01134250 NA coding upstream 141857 1127641 ~ 1134481 (+)
CI01000113_01120464_01124821 NA coding upstream 151307 1120398 ~ 1125031 (+)
CI01000113_01110162_01112498 NA coding upstream 163836 1110162 ~ 1112502 (+)
CI01000113_01072283_01091398 NOTCH3 coding upstream 184608 1071905 ~ 1091730 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding upstream 270939 996863 ~ 1005399 (+)
CI01000113_01292096_01298082 NA coding downstream 13153 1291953 ~ 1299919 (+)
CI01000113_01321501_01326215 NA coding downstream 42556 1321356 ~ 1326350 (+)
CI01000113_01329811_01334714 LPAR2A coding downstream 50083 1328883 ~ 1334735 (+)
CI01000113_01376249_01385209 NA coding downstream 95267 1374067 ~ 1385402 (+)
CI01000113_01424978_01425704 NA coding downstream 146178 1424968 ~ 1425835 (+)
G331583 NA non-coding upstream 18480 1257188 ~ 1257858 (+)
G331590 NA non-coding upstream 24526 1249680 ~ 1251812 (+)
G331619 NA non-coding upstream 41208 1229103 ~ 1235130 (+)
G331652 NA non-coding upstream 70076 1205979 ~ 1206262 (+)
G331651 NA non-coding upstream 70461 1205587 ~ 1205877 (+)
G331692 NA non-coding downstream 87018 1365818 ~ 1367922 (+)
G331702 NA non-coding downstream 110512 1389312 ~ 1389551 (+)
G331611 NA non-coding downstream 114445 1393245 ~ 1399662 (+)
G331709 NA non-coding downstream 209761 1488561 ~ 1491072 (+)
G331732 NA non-coding downstream 265047 1543847 ~ 1544077 (+)
G331615 NA other upstream 29765 1246291 ~ 1246573 (+)
G331487 NA other upstream 354205 917735 ~ 922133 (+)
G331470 NA other upstream 359801 913392 ~ 916537 (+)
G331260 NA other upstream 941717 334158 ~ 334621 (+)
G331767 NA other downstream 383985 1662785 ~ 1663255 (+)
G331759 NA other downstream 389202 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1064621 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 1289967 2548934 ~ 2577790 (+)

Expression


Co-expression Network