Gene
RNA
| Item | Value |
|---|---|
| gene id | G331744 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 1585698 ~ 1586364 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU377093 | False | 630 | lncRNA | 0.49 | 1 | 1585698 | 1586327 |
| TU377091 | False | 358 | lncRNA | 0.39 | 1 | 1585970 | 1586327 |
| TU377094 | False | 395 | lncRNA | 0.39 | 1 | 1585970 | 1586364 |
| TU377092 | True | 295 | lncRNA | 0.34 | 1 | 1586033 | 1586327 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000113_01547153_01553082 | NA | coding | upstream | 31912 | 1546736 ~ 1553786 (+) |
| CI01000113_01530888_01533572 | NA | coding | upstream | 52126 | 1530791 ~ 1533572 (+) |
| CI01000113_01515238_01529826 | NA | coding | upstream | 55747 | 1515171 ~ 1529951 (+) |
| CI01000113_01510550_01513751 | NA | coding | upstream | 71492 | 1510550 ~ 1514206 (+) |
| CI01000113_01507537_01509522 | NA | coding | upstream | 76176 | 1507537 ~ 1509522 (+) |
| CI01000113_01666106_01684663 | NA | coding | downstream | 79702 | 1666066 ~ 1684701 (+) |
| CI01000113_01691097_01696776 | NA | coding | downstream | 104733 | 1691062 ~ 1696776 (+) |
| CI01000113_01698764_01709585 | NA | coding | downstream | 112260 | 1698624 ~ 1709708 (+) |
| CI01000113_01716646_01752755 | NA | coding | downstream | 129385 | 1715749 ~ 1753351 (+) |
| CI01000113_01761054_01815819 | NA | coding | downstream | 174563 | 1760927 ~ 1815997 (+) |
| G331737 | NA | non-coding | upstream | 17491 | 1567829 ~ 1568207 (+) |
| G331735 | NA | non-coding | upstream | 30228 | 1555211 ~ 1555470 (+) |
| G331732 | NA | non-coding | upstream | 41621 | 1543847 ~ 1544077 (+) |
| G331709 | NA | non-coding | upstream | 94626 | 1488561 ~ 1491072 (+) |
| G331611 | NA | non-coding | upstream | 186036 | 1393245 ~ 1399662 (+) |
| G331746 | NA | non-coding | downstream | 15012 | 1601376 ~ 1601608 (+) |
| G331747 | NA | non-coding | downstream | 22857 | 1609221 ~ 1609426 (+) |
| G331755 | NA | non-coding | downstream | 49787 | 1636151 ~ 1636660 (+) |
| G331756 | NA | non-coding | downstream | 51754 | 1638118 ~ 1638433 (+) |
| G331790 | NA | non-coding | downstream | 147310 | 1733674 ~ 1781690 (+) |
| CI01000113_01424978_01425704 | NA | other | upstream | 159992 | 1424968 ~ 1425835 (+) |
| G331615 | NA | other | upstream | 339125 | 1246291 ~ 1246573 (+) |
| G331487 | NA | other | upstream | 663565 | 917735 ~ 922133 (+) |
| G331470 | NA | other | upstream | 669161 | 913392 ~ 916537 (+) |
| G331260 | NA | other | upstream | 1251077 | 334158 ~ 334621 (+) |
| G331767 | NA | other | downstream | 76421 | 1662785 ~ 1663255 (+) |
| G331759 | NA | other | downstream | 81638 | 1668002 ~ 1828903 (+) |
| CI01000113_02342987_02345449 | SYCE2 | other | downstream | 757057 | 2342987 ~ 2346006 (+) |
| CI01000113_02548934_02576888 | TBL3 | other | downstream | 982403 | 2548934 ~ 2577790 (+) |
