XLOC_011275


Basic Information

Item Value
gene id XLOC_011275
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 11418483 ~ 11419622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024597
ATGCTCCTATATGACTGCTTCAGCTCAGCATTCGACTAGGTTGCAAAGGCATAGACGAAATAACAAGCTGTTGAGCTGAGGTTGTGTTTCTCGGATCCCTATTGGCTGCCGGAGCCGCTGTGGGCAAACTCCGagcattgtgattggctgtcGAATAAACCGCATTCTATTGGCCAGACTAAAGCGCGCTAGCTGATTGCTGAGTACAAAAGCGGCGCTGCGAATTGCGCGTTCTCATTGGTGTTCTTTGATTCTCAGTATTTGGGAATACAACAAATTCATCCTGGTTTTCCATTGGCTGCATATTTCCTGTTCTGCGTTGTCCACGTTTTTAATTGGCCGATTTCCTCTAGAAGCGTCCCATCTGCGAAGCCCATTGGCTGAAGGATGTATGGGAACGGAGCTTGATTTCCGAGGGAAAGCCTCTGCTCAGATCTGCGCATGTCCAGACGGAGAGAACATTCGCCATTTTGTACCCAGCGTAATTATTTTCGCATTCTGGACTCGGAGCCCGTGAGATTTCGCGGTGAGCCGTGCGATTGTTTTCTCTCTGCTTGTCTAGTCAAAGCGAGCAGTCTTACATCGTTCTAGCTTCAGTGGTTCCTTTATGTGATTTACATTGCGATTGTTTTACCAATAAATAATTCTAAACGCGGTCGTGTAGAAAAGGTCAATTGAAGGCAACGGTAATGGCGTCTTTATGTCGTTTCTGTGGAGAGCGTCTGGCGTCATTGGTTTTGGCCACGTGACCGGAAAAGAGCGCCACAGTAAGCATGCGTGACACGTTAGATTTTTATTCAAAGACACCTACCTTGTTTTAATTATTctgcattatatttttttctaaaaatttaTACTCAAACATAACATTAAATCATTGTGATTTTAGAATCAATACTGGTTTCAAAAAGTATTGtggtattaaaatgtttttacattacaatCTTATGTgtattactttaataataattgatatagTTTAAATGTGTAACCCGGATCAGAAAATAATCCATACCTGTGCGATGCTGATCCATTTGTTAACCACGTACTATCTGTACATTGTGTGTTAAACAATAAACTTGTCAGTATTCCTTTGCATTAATGAGATTGTACATTAATCTGTATGTACACATTACATAG
>TCONS_00022503
TTCCTTTATGTGATTTACATTGCGATTGTTTTACCAATAAATAATTCTAAACGCGGTCGTGTAGAAAAGGTCAATTGAAGGCAACGGTAATGGCGTCTTTATGTCGTTTCTGTGGAGAGCGTCTGGCGTCATTGGTTTTGGCCACGTGACCGGAAAAGAGCGCCACAGTAAGCATGCGTGACACGTTAGATTTTTATTCAAAGACACCTACCTTGTTTTAATTATTctgcattatatttttttctaaaaatttaTACTCAAACATAACATTAAATCATTGTGATTTTAGAATCAATACTGGTTTCAAAAAGTATTGtggtattaaaatgtttttacattacaatCTTATGTgtattactttaataataattgatatagTTTAAATGTGTAACCCGGATCAGAAAATAATCCATACCTGTGCGATGCTGATCCATTTGTTAACCACGTACTATCTGTACATTGTGTGTTAAACAATAAACTTGTCAGTATTCCTTTGCATTAATGAGATTGTACATTAATCTGTATGTACACATTACATAG

Function

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0031985 Golgi cisterna cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024597 False 1140 lncRNA 0.41 1 11418483 11419622
TCONS_00022503 True 540 lncRNA 0.33 1 11419083 11419622

Neighbor

gene id symbol gene type direction distance location
XLOC_011274 CU076099.4 coding upstream 16523 11401947 ~ 11401960 (+)
XLOC_011273 NA coding upstream 38630 11377992 ~ 11379853 (+)
XLOC_011271 timm9 coding upstream 41288 11372531 ~ 11377195 (+)
XLOC_011272 FP102895.1 coding upstream 43587 11374774 ~ 11374896 (+)
XLOC_011270 pimr177 coding upstream 596308 10817675 ~ 10822175 (+)
XLOC_011276 NA coding downstream 73228 11492850 ~ 11495433 (+)
XLOC_011277 efcab2 coding downstream 81006 11500628 ~ 11505070 (+)
XLOC_011278 kif26ba coding downstream 87509 11507131 ~ 11718491 (+)
XLOC_011279 BX276117.1 coding downstream 388409 11808031 ~ 11966441 (+)
XLOC_011280 tfb2m coding downstream 638887 12058509 ~ 12073355 (+)
XLOC_011269 NA non-coding upstream 643178 10771853 ~ 10775305 (+)
XLOC_011259 NA non-coding upstream 1475760 9916763 ~ 9942723 (+)
XLOC_011282 NA non-coding downstream 716368 12135990 ~ 12137752 (+)
XLOC_011286 NA non-coding downstream 841280 12260902 ~ 12278529 (+)
XLOC_011296 BX294369.1 non-coding downstream 1381842 12801464 ~ 12801579 (+)
XLOC_011297 BX649530.2 non-coding downstream 1449208 12868830 ~ 12868944 (+)

Expression


Co-expression Network