Gene
RNA
| Item | Value |
|---|---|
| gene id | G332679 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 2110690 ~ 2112552 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU378206 | True | 1291 | lncRNA | 0.44 | 2 | 2110690 | 2112552 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000113_02007178_02015572 | NA | coding | downstream | 94855 | 2007178 ~ 2015835 (-) |
| CI01000113_01917876_01982420 | PRKAR1B | coding | downstream | 128270 | 1917286 ~ 1982420 (-) |
| CI01000113_01908893_01913809 | NA | coding | downstream | 196462 | 1908739 ~ 1914228 (-) |
| CI01000113_01871256_01883265 | PDGFAB | coding | downstream | 226290 | 1870390 ~ 1884400 (-) |
| CI01000113_01854931_01857730 | NA | coding | downstream | 251815 | 1854766 ~ 1858875 (-) |
| CI01000113_02127709_02131244 | DHYS, DHPS | coding | upstream | 14657 | 2127209 ~ 2131244 (-) |
| CI01000113_02136165_02143106 | NA | coding | upstream | 22772 | 2135324 ~ 2143106 (-) |
| CI01000113_02159290_02165087 | SLC25A19 | coding | upstream | 46158 | 2158710 ~ 2165087 (-) |
| CI01000113_02170894_02179511 | AMDHD2 | coding | upstream | 58209 | 2170761 ~ 2181419 (-) |
| CI01000113_02193825_02200601 | TUBB4A, TUFM | coding | upstream | 80803 | 2193355 ~ 2201275 (-) |
| G332645 | NA | non-coding | downstream | 64803 | 2042839 ~ 2045887 (-) |
| G332657 | NA | non-coding | downstream | 92915 | 2017342 ~ 2017775 (-) |
| G332751 | NA | non-coding | downstream | 277385 | 1832400 ~ 1833305 (-) |
| G332670 | NA | non-coding | downstream | 278841 | 1831421 ~ 1831849 (-) |
| G332663 | NA | non-coding | upstream | 133 | 2112685 ~ 2113398 (-) |
| G332652 | NA | non-coding | upstream | 972 | 2113524 ~ 2114332 (-) |
| G332661 | NA | non-coding | upstream | 4414 | 2116966 ~ 2117788 (-) |
| G332650 | NA | non-coding | upstream | 5384 | 2117936 ~ 2118250 (-) |
| G332638 | NA | non-coding | upstream | 5818 | 2118370 ~ 2119146 (-) |
| G332160 | NA | other | downstream | 1663853 | 390227 ~ 446837 (-) |
| G332210 | NA | other | downstream | 2061205 | 47990 ~ 49485 (-) |
| G332649 | NA | other | upstream | 34662 | 2147214 ~ 2148558 (-) |
| G332837 | NA | other | upstream | 138293 | 2250845 ~ 2251213 (-) |
| CI01000113_02356565_02370009 | NA | other | upstream | 255064 | 2356565 ~ 2370009 (-) |
