G332652


Basic Information

Item Value
gene id G332652
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2113524 ~ 2114332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU378179
TAAAATGTAATGACATTCAGACATTTTTGACCTCACCAGCTGCAGAAAGCTGCAAAAGAGTTTAAAGCATAATATTTTCCCCCTAGAAACATCATTATGCATTTTCCACACACACAAACGTGCCTTTCCAAGCGAGACTGCAACCAAAAACGATGCATTAGGACTGAATATTGCTTTTAAAGGGCATCTGCACTATCTGAAAAGCTGTGATGTATTTTCCCGATTCTCGAATGCTTCAAATCATCCACCCAGCTCAATTGAGACTTGATGAAGTGACGCCTTGCAAACGGGAAGATCTCTGTCCATTAATATTTTCCATCAGATCTTTCCTTTCAGCTTTTTCCCACTAAATTGAAGGCGCAGTTGCCAGTGATCTCAGTCTTTCCTCTCACTAATGACGGCGTCTGGCGTGATGCAGTCGATGCGGTTACACCTCACAGAGGAACAGAGCAGGAATGACTTTTTACGGCTGTCCTCATGATGAGAAGTCACACTTTCATCCTGCAGTGTTGCAGCTAATTTTAGGGACTGGAGAAAAAGTACCCATAATATCCCATTTGCTCTGATGCACACCAGATCTGTATAGTTGCCAGCAAATTTGATTTTTCCTTTAGCCGCGGTAGGGAATCTGATACTAGGCCTTCTTAAAATCTGGACATAGGGTTGGATGCTCCACACATGCTCACACAGTATATTTTATACATAAGCATACACACACACACTTGTATATGTGGTTTGTGGGGACTCTTTGTAGAAGTAATGGTTTTTATACTGTATAAACTGTATATTCTGTCCCCCTACACTAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU378179 True 809 lncRNA 0.42 1 2113524 2114332

Neighbor

gene id symbol gene type direction distance location
CI01000113_02007178_02015572 NA coding downstream 97689 2007178 ~ 2015835 (-)
CI01000113_01917876_01982420 PRKAR1B coding downstream 131104 1917286 ~ 1982420 (-)
CI01000113_01908893_01913809 NA coding downstream 199296 1908739 ~ 1914228 (-)
CI01000113_01871256_01883265 PDGFAB coding downstream 229124 1870390 ~ 1884400 (-)
CI01000113_01854931_01857730 NA coding downstream 254649 1854766 ~ 1858875 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding upstream 12877 2127209 ~ 2131244 (-)
CI01000113_02136165_02143106 NA coding upstream 20992 2135324 ~ 2143106 (-)
CI01000113_02159290_02165087 SLC25A19 coding upstream 44378 2158710 ~ 2165087 (-)
CI01000113_02170894_02179511 AMDHD2 coding upstream 56429 2170761 ~ 2181419 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding upstream 79023 2193355 ~ 2201275 (-)
G332663 NA non-coding downstream 126 2112685 ~ 2113398 (-)
G332679 NA non-coding downstream 972 2110690 ~ 2112552 (-)
G332645 NA non-coding downstream 67637 2042839 ~ 2045887 (-)
G332657 NA non-coding downstream 95749 2017342 ~ 2017775 (-)
G332661 NA non-coding upstream 2634 2116966 ~ 2117788 (-)
G332650 NA non-coding upstream 3604 2117936 ~ 2118250 (-)
G332638 NA non-coding upstream 4038 2118370 ~ 2119146 (-)
G332820 NA non-coding upstream 30572 2144904 ~ 2145741 (-)
G332821 NA non-coding upstream 31870 2146202 ~ 2146500 (-)
G332160 NA other downstream 1666687 390227 ~ 446837 (-)
G332210 NA other downstream 2064039 47990 ~ 49485 (-)
G332649 NA other upstream 32882 2147214 ~ 2148558 (-)
G332837 NA other upstream 136513 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 253284 2356565 ~ 2370009 (-)

Expression


Co-expression Network