G332661


Basic Information

Item Value
gene id G332661
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2116966 ~ 2117788 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU378188
CGACATGAGGGTGAGTAATTACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGAACGTTATAAATGCAATGGGATGTCACAATACTCAATGTGCATACATTTAGTTTGATGACACTAGTGGCTATTAACAAAGGCATTGGCAGCACTCAAAGTCTCGTCCTTTTGCTGATTTCGGTTCCAGGATGGCAGAACTTAACCACTGTGAACATAGAAGTTCAATGCAGTGTTCACAAGTGGGTTAAGTCCTGACACCACACAACCCCCATAGAAATGCATGTGAATTTGAACTTCTGTCACCACTAACCCGTGTGTGTGTTTGTGTGTGTGCGCGAGACGGTCCGCATTCCTTCAGGATTAGCATTTCATGTGCTCAGGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCTGCATATATCTGGCGTGTCTGCAGTCTCCCAGTCGAGTCCCTCACACGGGCCATTGGAAATCCCTGGCAATGTGATTCAGTCATTAGGTTTAAAAATCACTCTGCCAGGAATTCCCCTGGCCGGCAGAAGAGGAGGGTCCAGGTTTATGTCATTCTGTCTGAGGTTTGGTCCTACACTTCTATATCTGTCCTCCTAACACATCAAGCACGAGGGCTCTGTGAGAACAGCAAACAACACAGCAGACAGATAGCAAACAGACGGGACAAAAAAAAGGGGGAGAGTTCGAAAAAAATGAAAGCTATGGAACGTCATCATTTACTCACCCTTGTGTTGTTCAATCCAAACCTATAGGACTTTCTTTTTTCTTTTCTTTTGAGGAACATGTTTAGGAGAATGTCGGTGCTGTTCTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378188 True 823 lncRNA 0.44 1 2116966 2117788

Neighbor

gene id symbol gene type direction distance location
CI01000113_02007178_02015572 NA coding downstream 101131 2007178 ~ 2015835 (-)
CI01000113_01917876_01982420 PRKAR1B coding downstream 134546 1917286 ~ 1982420 (-)
CI01000113_01908893_01913809 NA coding downstream 202738 1908739 ~ 1914228 (-)
CI01000113_01871256_01883265 PDGFAB coding downstream 232566 1870390 ~ 1884400 (-)
CI01000113_01854931_01857730 NA coding downstream 258091 1854766 ~ 1858875 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding upstream 9421 2127209 ~ 2131244 (-)
CI01000113_02136165_02143106 NA coding upstream 17536 2135324 ~ 2143106 (-)
CI01000113_02159290_02165087 SLC25A19 coding upstream 40922 2158710 ~ 2165087 (-)
CI01000113_02170894_02179511 AMDHD2 coding upstream 52973 2170761 ~ 2181419 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding upstream 75567 2193355 ~ 2201275 (-)
G332652 NA non-coding downstream 2634 2113524 ~ 2114332 (-)
G332663 NA non-coding downstream 3568 2112685 ~ 2113398 (-)
G332679 NA non-coding downstream 4414 2110690 ~ 2112552 (-)
G332645 NA non-coding downstream 71079 2042839 ~ 2045887 (-)
G332657 NA non-coding downstream 99191 2017342 ~ 2017775 (-)
G332650 NA non-coding upstream 148 2117936 ~ 2118250 (-)
G332638 NA non-coding upstream 582 2118370 ~ 2119146 (-)
G332820 NA non-coding upstream 27116 2144904 ~ 2145741 (-)
G332821 NA non-coding upstream 28414 2146202 ~ 2146500 (-)
G332656 NA non-coding upstream 38729 2156517 ~ 2158361 (-)
G332160 NA other downstream 1670129 390227 ~ 446837 (-)
G332210 NA other downstream 2067481 47990 ~ 49485 (-)
G332649 NA other upstream 29426 2147214 ~ 2148558 (-)
G332837 NA other upstream 133057 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 249828 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025130 dre-mir-23a-2 non-coding NC_007114.7 CM002887.2 13406226 ~ 13406323 (+)