G332656


Basic Information

Item Value
gene id G332656
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2156517 ~ 2158361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU378183
GATCCAAATTGAAAACAGCTAAGAAATCTCATGAACTTCAAAGCATCTCTGAATATTTTCTCTGAGTATTTCTCACATCATACAACCTTATGGCTTTCTGCGAGAATCTACAACAATAGATTTAAAAAGATAAAAACCACTGTACAAAGTTAGGCTATAGACTGGAGTGATATAAATGGGAGGCTATGCTATAATGATTAACCCATGAAACAGTTCACTGTGAATAAATATTAACTATGTACGACTGTCTGGGAATTAATAACTAATCTGTACTGAACTTTTGATGTAGCCTAGTGAGTGACTAAATAGGGCGCGGCCACATTTACACTTGTATGGCGAAATTGCGTGGGAGAAATGCAGTCATCTATTTCACGCGAAGCGAAACATTAAGGGTATGATTTAAGTTTTTTCAACTTTGTTCAAGCGAATTGACGCATTGACCAATAACTGCTCAGTTTAGAAGTTGAGTATGAATAATCTGTGCTTAATGCGTCGCTACACTATTGAAAATGGACAACGGACATTCTTTGCCCGCGAAATTTCGCATAAGTTTCGCTAATGACCACTCCTTGATACACAGTTAATTCAGGATAGGCTAATTGGGACATTTTTCCCAGTCATTCAGTGGCATCATGCCCATTCAAACCGATTTAGCCAAATGGATTTGAATGCAGCTTCCAAAAGATTATGCTAGGTTTGAAGGATTTGAAGGAACCTCTGATTCACAAAATGTGCTGTCAAATGTCGAGTAGGGTTAATTCAGGGTGATGCCATTGAGATAAATTGGAAAAAGTGTCCCAATCAACCTGAATTCACCTGCCCTTGCAGTCATCTCAATGGCAAAAGGTGTCCCAATTTATAGTATATCCAGTAATGGCATGGCATATTGGTGTTTTTTCTTCTTCATGTGAAACCAAAGATAAATCAAAAGGGTTAACCACTCTGTTCATGATGGGTAAAGAATACTATTTTAACCGAGTAGGCCATATCTCCAATGTATACCAAGAGGTTGATGACAGTCATGAAGGCCACCACCACCAGATCATCCCATGAACAGTGGTTACATGCATTAGGACGTGGGTTTTTGTCAAATGCGTACAACGGCCAGATAACAACAGCGGTTGCGTACATAGCCACGGCCAGGATGTTGAAGGTAATGACCGCCTTGTCGAAAGAAAACGGAAAGACATGCAACAGCTTGGCAATGGTGAGGAGAATAATTAGCAATGAAAAAATGAAACATATGGAGTAGACGGCCACACACCACTTCATTCCCGGAAACCTATTATATTCGCCAGGACTCAAAGACATGAATATGATGCAGGAAACAAAGGTCTCCAGGATCTTGAGGAGACCAGGGACGGTGGTGAGAAAGCCGCTGGTTTCACCAGGTTTTTTGTAGAACAACCAGACCTCGGCGGCGTACAGTCCGAAACACAACCAGGACACTGTAGAAGCCCCGATCTGCTTGGAGCAGGAGGAGCAGGCGAAGAACGTGGGATAGACGATAGAAATGGTGAACATCATAAGTGTGGACAGCATAGCAAAGGCCATGGTGAAGTCCTCCCAGGAAATGAGCACTTTAGTGTGGAGGTTGGTGAACTCCAAGACGAGGATGAGGAGGGTCGTGAAACAGCAGAAGCACCAGCAGAACATGCACCAGGCCCAATGGGACTGACCGTTGTTCGGGACTCCTGCTGATGCCGTCAATGCAAAGCAGATGCAAGTCAGAACCACCTCCAGCATCCGCACAATGCCAACAGGCAGAATTAGTGTTCTGAAATCCACGTGCAACATGATGAAACAGTTTCACAAATCCCAAAGTCTTGATGTTTTGCTTTTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU378183 True 1845 lncRNA 0.43 1 2156517 2158361

Neighbor

gene id symbol gene type direction distance location
CI01000113_02136165_02143106 NA coding downstream 13411 2135324 ~ 2143106 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding downstream 25273 2127209 ~ 2131244 (-)
CI01000113_02007178_02015572 NA coding downstream 140682 2007178 ~ 2015835 (-)
CI01000113_01917876_01982420 PRKAR1B coding downstream 174097 1917286 ~ 1982420 (-)
CI01000113_01908893_01913809 NA coding downstream 242289 1908739 ~ 1914228 (-)
CI01000113_02159290_02165087 SLC25A19 coding upstream 349 2158710 ~ 2165087 (-)
CI01000113_02170894_02179511 AMDHD2 coding upstream 12400 2170761 ~ 2181419 (-)
CI01000113_02193825_02200601 TUBB4A, TUFM coding upstream 34994 2193355 ~ 2201275 (-)
CI01000113_02334123_02335356 NA coding upstream 175150 2333511 ~ 2335356 (-)
CI01000113_02348726_02354574 GCDHB, GCDH.L, GCDHA, GCDH coding upstream 190245 2348606 ~ 2354574 (-)
G332821 NA non-coding downstream 10017 2146202 ~ 2146500 (-)
G332820 NA non-coding downstream 10776 2144904 ~ 2145741 (-)
G332638 NA non-coding downstream 37371 2118370 ~ 2119146 (-)
G332650 NA non-coding downstream 38267 2117936 ~ 2118250 (-)
G332661 NA non-coding downstream 38729 2116966 ~ 2117788 (-)
G332866 NA non-coding upstream 131287 2289648 ~ 2290022 (-)
G332871 NA non-coding upstream 140108 2298469 ~ 2298893 (-)
G332872 NA non-coding upstream 145905 2304266 ~ 2330958 (-)
G332894 NA non-coding upstream 255348 2413709 ~ 2419211 (-)
G332898 NA non-coding upstream 270497 2428858 ~ 2455150 (-)
G332649 NA other downstream 7959 2147214 ~ 2148558 (-)
G332160 NA other downstream 1709680 390227 ~ 446837 (-)
G332210 NA other downstream 2107032 47990 ~ 49485 (-)
G332837 NA other upstream 92484 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 209255 2356565 ~ 2370009 (-)

Expression


Co-expression Network