G332009


Basic Information

Item Value
gene id G332009
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2537745 ~ 2538362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU377445
CTGTTTCTCTGTCCTCTGTGCTGCAGTTGATACAGTGTTGTGGTTTTTATGTTCATACTCCTTACACCACACACAGATGCATTGTTGATCAGTGATACAGAACATTTCTAGCTCTTTATCATGTTTACGGCAGATCATGTCCTGCAGTCGTCCAGTGGCATCGATCACTTTGTGTGGTTTACGAGAGTGATATTCCTCATGACGGTCAAAATGAGTTTGACAGAAAGACTCCTGACACACCAGACAGGACTTGACGGCTTTGTATTTTATTCCAGTACAGACGTCACACTGCACGTCTCCAGCTCCAGCGTAACAGTCAGCAGGAAGTTCAGTCTTCTTCAGTTTCTCCACCACTTCAGCCAGAATGGTGTTTTTACCTAAAGCAGGTCTTGGACTGAAGGTCTGTCTGCACTGAGGGCAGCTGTAGACTCTCTTCTCATCCTCCTGATCCCAGCAGCCTGTAATACAGCTCTTACAGTAACTGTGTCCGCAGTGGATGGTCACTGGATCCTTCAGGAGATCCAGACACACTGGACACGTGAACTCATCCTGAGAAAATTCTGCCATTTTACTGCATGAATACAGAGACACAAACACACAACAGCTCAACAATACTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU377445 True 618 lncRNA 0.46 1 2537745 2538362

Neighbor

gene id symbol gene type direction distance location
CI01000113_02418950_02434326 NA coding upstream 103289 2418950 ~ 2434456 (+)
CI01000113_02387553_02403367 SLC44A2 coding upstream 134378 2387553 ~ 2403367 (+)
CI01000113_02342987_02345449 SYCE2 coding upstream 191739 2342987 ~ 2346006 (+)
CI01000113_02321704_02328603 FARSA, FARSA.S, SYFA coding upstream 208882 2321704 ~ 2328863 (+)
CI01000113_02300492_02320320 ILF3B, ILF3 coding upstream 217175 2297820 ~ 2320570 (+)
CI01000113_02548934_02576888 TBL3 coding downstream 10572 2548934 ~ 2577790 (+)
CI01000113_02623348_02657507 TOM1L2 coding downstream 84775 2623137 ~ 2657507 (+)
CI01000113_02685260_02707606 SREBF1 coding downstream 146898 2685260 ~ 2708849 (+)
G332037 NA non-coding upstream 19593 2517841 ~ 2518152 (+)
G332017 NA non-coding upstream 78274 2459189 ~ 2459471 (+)
G331981 NA non-coding upstream 81238 2379240 ~ 2456507 (+)
G331982 NA non-coding upstream 132757 2392317 ~ 2404988 (+)
G331979 NA non-coding upstream 165742 2371802 ~ 2372003 (+)
G332039 NA non-coding downstream 2065 2540427 ~ 2540655 (+)
G332042 NA non-coding downstream 17411 2555773 ~ 2557247 (+)
G332011 NA non-coding downstream 63976 2602338 ~ 2604908 (+)
G332054 NA non-coding downstream 164572 2702934 ~ 2703362 (+)
G332057 NA non-coding downstream 173314 2711676 ~ 2711928 (+)
G331759 NA other upstream 708842 1668002 ~ 1828903 (+)
G331767 NA other upstream 874490 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 1112039 1424968 ~ 1425835 (+)
G331615 NA other upstream 1291172 1246291 ~ 1246573 (+)

Expression


Co-expression Network