G332011


Basic Information

Item Value
gene id G332011
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2602338 ~ 2604908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU377447
TCAATAGTCTTTATTTTCTTATCCTTTTGTGCCAATAAAAAGATCACTCATTATTGTAGAGAATTAAATCATTTGTGTACACCACAAACAGCCCTATTATGTACATTTGTACTGTAACAGCATGTGCAGTGGCCTTTCATTTTCTTAGCATTTATTTAAATAAATTTTGACCTTCAGGCAGCAGATTATTAGGTGCAACAAACAAAACATCCCACATTTTCATAAACATCTTTCTGAAACCACGTTTCTGCTTTTGTTAAGGACAACAAAATAAATAAAATAGGAAAAAATGCCAATTATTGGGTGTGTTTTAGGTATTTTGCATGGAAAATAATGTGCATTAATAGTTGGATTTGGGCATGTGATGAGCCTATATATATATATATATATAGTCTTACTTTGTATGTACAACAACATAGCTAGGTTGAAATGTGGTGTGAACCTGTTGTTAAATACTCACTATTCTACAATTAAAAAGGAGGTTTTGGTGGATGAGGTACAGCAATCTTTCTTTTCAAACTCCTCAAACACTTTCATAACCTGAACACACATTCGTATAAGTCTTTCTGTCTGTACAGAGCTTAAACTAATGCTTATAAAAGTGGTTTCATAGACAAATCTCTGACTTTTAAGGCAAAGGGTTTGACTAAAGCTTAAATGGACACACATGGGTATTGTATCATAAATGTTTCTCCTAAACTTCCAACACCTCACGAGAGGCTTCCTTAAAGCCTCAGCCGTTATATTTTGTGCATTGCTAGACTGTAAAAGATGCAGATCACGGCCAACAAAAACGAGTCGAGGCTGATGGGTGGTTTAAAAGAACAGTGTTGTCCATCATCTGGACTGTTTGATTTTAAAAATCTTCCTGAGCCTTCCAATAAAAACACTTGCTTATCCATCATGGACTGAAAGCAACGTCTGTGCATCTCCGGCCTTGCGCTTCGACACGCCGCGTGACACTGGTGCAAAAACCAATCAATACTCTCTGAGCTGTGAATATTAAAGTGAACAAGTGAGAAGATACTTGCATGGAAGCCTGTTTCTGCCTTAAAACAATAAAAAGGAAACTGCGACTTTTGAAAATTACAGACTTATTTTTGTGGAATTCTACGTTTTTTTTTTTTAATCAGAATACTGGAATTCTGAGTTTATATCGCACAATTCTGACTTTTTTTCCCCTTTACCAAAATACCAGAATTCTGAGTTTCTCTTGCAATTTTGTTTACATCTCGCAATTCTGACTTATTTTTGCGGAATTCTGAGTTTACATCTTGCAATTCCAACTTTTTTTAGCAGAATTCTGAGTTTACATCTCATGATTCTGACCTTTTGCTCACTTTTGTGAGTTTATATCTCACAATTCTGACTTTAACTCAGAATTCTGAGAAAAAGTTAGAATTGCGAGATGTAAACTCAGAATTCTGACTTTTTTTTCCAGAAATTGCAGGTATACTGCAATTCTGATTTAAAAATATGTAACAAGGTGTTAAATAAAAATTCCAAGAATTACGAGAAATAAAGTTGGAACTGTGTGATTAAAAAGTCACAATTACCTATTTTCTTTTCTTTTTTTTTTATTCTGTGGCAAAAACAAGCCTCCATTTACTTGAGATTCTTACAAGCTGAGATTTTTCAGGTTGCATAGCAAAACAAGGAGCGTAAAACTACCAACAGATTTTTTTTTTTTTTTTTTTTTAAATCAGAAATGTTTCATCCAAAGCAGCTCTACAAATAGCTTGACCACCATGGGATAATATATACCTCTTGCCAAAACACCTGACTCCATTTCACTTCATAATAAAAAATATATCACATGTAGAAGCAAAAGACCCAGCTGTTATATATGTGACTTTTGATGATACACCTTACGTTAATAAAAAACGTCCGAGGGCCAAGCAAGCCACAGACAATAGCAACTCTCTGTATCCATCATATCGCACACTGAATCTTTGATACGTCTGTAAAAGACGTCACCAGTGTCTGTATACACGGCCACAGTCATTTACACAGTCTTTTCATCACAGAATGATTAAAAATAAATTAAAACAAATTTCAAAATTTCTAGATTGGCCATGCTGTTTTATCAAATTACAAGGCAAAAAAAAAAAAAAAAAGTATCACAATTGGCTCTTCCATCCAGAAAAACTGTGATTTTAATCCCCAAACCTTAAGGATAAAAATGGTTTTCTAAGATGACCGGAGGACAGAAGCATTAAAAACTCAGAAACTTAAAAGGAAAAACCAAAACGCTAACACTGCTGCGAATCCCCGATTCCCGCTCGCTTGATCGGCCTGTGTACAGTCTCTTGAAAGAGTTCTCCATCATCTGTACCTCCATTTTAATCGTTCTTTGAGGGGAGAGGACAGCCGAGTCCTTGGCGTAATCATTAGACAGTTCCTCTCTTTCACTCATGTCCATTTCCTCTGTCCACTGCAGATTCACCCTCTTGCTGTGACGCGAGGACTTCAGTGTCACCGGAACTCATAGATGGGTGCGCTGTGTTCAGGGACGTGTGTGAGGTTCAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU377447 True 2531 lncRNA 0.36 2 2602338 2604908

Neighbor

gene id symbol gene type direction distance location
CI01000113_02548934_02576888 TBL3 coding upstream 24548 2548934 ~ 2577790 (+)
CI01000113_02418950_02434326 NA coding upstream 167882 2418950 ~ 2434456 (+)
CI01000113_02387553_02403367 SLC44A2 coding upstream 198971 2387553 ~ 2403367 (+)
CI01000113_02342987_02345449 SYCE2 coding upstream 256332 2342987 ~ 2346006 (+)
CI01000113_02321704_02328603 FARSA, FARSA.S, SYFA coding upstream 273475 2321704 ~ 2328863 (+)
CI01000113_02623348_02657507 TOM1L2 coding downstream 18229 2623137 ~ 2657507 (+)
CI01000113_02685260_02707606 SREBF1 coding downstream 80352 2685260 ~ 2708849 (+)
G332042 NA non-coding upstream 45091 2555773 ~ 2557247 (+)
G332039 NA non-coding upstream 61683 2540427 ~ 2540655 (+)
G332009 NA non-coding upstream 63976 2537745 ~ 2538362 (+)
G332037 NA non-coding upstream 84186 2517841 ~ 2518152 (+)
G332017 NA non-coding upstream 142867 2459189 ~ 2459471 (+)
G332054 NA non-coding downstream 98026 2702934 ~ 2703362 (+)
G332057 NA non-coding downstream 106768 2711676 ~ 2711928 (+)
G332058 NA non-coding downstream 107249 2712157 ~ 2712373 (+)
G332098 NA non-coding downstream 180512 2785420 ~ 2785663 (+)
G332069 NA non-coding downstream 182278 2787186 ~ 2788491 (+)
G331759 NA other upstream 773435 1668002 ~ 1828903 (+)
G331767 NA other upstream 939083 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 1176632 1424968 ~ 1425835 (+)

Expression


Co-expression Network