Item | Value |
---|---|
gene id | G332143 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000113 |
NCBI id | null |
chromosome length | 2886875 |
location | 2861581 ~ 2861898 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU377587 | True | 318 | lncRNA | 0.38 | 1 | 2861581 | 2861898 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000113_02685260_02707606 | SREBF1 | coding | upstream | 152732 | 2685260 ~ 2708849 (+) |
CI01000113_02623348_02657507 | TOM1L2 | coding | upstream | 204074 | 2623137 ~ 2657507 (+) |
CI01000113_02548934_02576888 | TBL3 | coding | upstream | 283791 | 2548934 ~ 2577790 (+) |
CI01000113_02418950_02434326 | NA | coding | upstream | 427125 | 2418950 ~ 2434456 (+) |
CI01000113_02387553_02403367 | SLC44A2 | coding | upstream | 458214 | 2387553 ~ 2403367 (+) |
G332102 | NA | non-coding | upstream | 57641 | 2795583 ~ 2803940 (+) |
G332069 | NA | non-coding | upstream | 73090 | 2787186 ~ 2788491 (+) |
G332098 | NA | non-coding | upstream | 75918 | 2785420 ~ 2785663 (+) |
G332058 | NA | non-coding | upstream | 149208 | 2712157 ~ 2712373 (+) |
G332057 | NA | non-coding | upstream | 149653 | 2711676 ~ 2711928 (+) |
G333019 | NA | non-coding | downstream | 7193 | 2869091 ~ 2869320 (+) |
G333020 | NA | non-coding | downstream | 10632 | 2872530 ~ 2872730 (+) |
CI01000113_02342987_02345449 | SYCE2 | other | upstream | 509711 | 2342987 ~ 2346006 (+) |
G331759 | NA | other | upstream | 1032678 | 1668002 ~ 1828903 (+) |
G331767 | NA | other | upstream | 1198326 | 1662785 ~ 1663255 (+) |
CI01000113_01424978_01425704 | NA | other | upstream | 1435875 | 1424968 ~ 1425835 (+) |