XLOC_011299 (nfkbiab)


Basic Information

Item Value
gene id XLOC_011299
gene name nfkbiab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 12942021 ~ 12949754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022539
ATGGAATGTATGATTCAGTATCTTACActattttcattaaacattatttatatatttaaattagttaatCATATGAATTCTATGTACATAAAATTAACCCTACTtagaactaaatatttaaaatatatcttgCACAATGTGTAAATTAcaaatgcaaaatatatatatattaatttacatattgtgcttgatatattttttaatatttagctcTAAGCACATATTTTAAGGGTTACCTGcgtatatattttaatgtacattttgtGTGCATGTTGCAACATCAGAATTACAGAACAATCTGCATGCCTGGTCTTTCAGCacaacattttgaaatgtttcaaGATGGGACTTTTTGCAAGCCACTACTTTGCAATGTTGGTGCGTAGGTATACACGTTTTCTTTTCTGAcccaaaatgtttatgttttttttcccccatttcagCCAGCCCCTATTGGAATTCTGGAATAAGCTTTCAGTATTACATACATACGGACTTCTGATAGATTTAATAAAGCAGAGAAAAAAATCCCCAAACTCCCTCCAGTCCATTCACACGCTAATAATCACTGGAAATCCCCCACCTTCGCCGAAGCCCCGCCTCCTTTTTCGTCTCTTTTAACTCTCAGAAAAGCTTCATAGTCCAGACACAAACTGCAGACCGTGAAACATGGAGCTTTACCGAGGCACCACTGCCAACCAAACGGATTATAATGACGACGGTCGCGGCCCCAAATCTGGGAAATTGCTCTCAAACACCGACGAGCGTTTGGACAGCGGGTTGGATTCGTTAAAAGAGGACAATCTTCCGTCGCTTGAGGAATGCAGAATCACGGACTTTGTCGGGCCGACGGACGAGCCCTGGAAGAAAGAGCTCACCGAGGACGGAGACACgTATCTACATCTCGCCATTATCCACGAGGCCACAGATGCTGCACTAAAAATGATTGCGTTATCCCGAAGAGACCCTTTCCTCAATATACAAAACAACCAGAGACAGACTGCACTGCATTTGGCCATCATCACAGATCAGCCTCTCATAGTGGAGCAGTTACTAAAAGCCGGCTGCGATGCATCTTTGGTGGATGACCATGGTAATACTGCACTCCATATCGCCTGCAGGAAAGGATCTCTGGCCTGCTTCGGCCTCCTAACACAAGGCTGCTCGCAGCACCTCTCAGCCATCCTCCAGACACCAAACTATAATGGTCAGAAATGCATACACGTGGTCGCCATCCAGGGTTACTTGTCATTGTTGGAAAGCCTCATCCAGCTCGGCGCAGATATAAATGCAcagGAGCAGTGTAACGGCCGAACCGCTCTCCACCTCGCCGTGGACCTCCAAAACTTTGACATGGTCAAACTTCTCATCGAAAAAGGTGCCAGTGTTCACAGTGTCACATACGGCGGTCACACGCCTTATCACCTGACCTACGGCCGGTCGAACGCTGACATCCAAAAAGTCCTGTATGAGCTCACGTCGCCACACCTAAGGGAACTTCCAGAGAGTGACTCAGAAGATAGTGAGGATAGCGACGAGGATTATGAAGAGCGCTGTCAGTCTGAGGTGGAAGACGTAAGTCTGCATATTCCTTTGAAAGTCTTTGTGTAATTCTGTAAAAATGTACATGTTTCTAATTATCTTCCTTCGTTTTGACAGCTGTAtgatgatattaaagtgatggggCAGTAGGACTTGTGTGTCGAATGGAGATGAAAAGAGATGAACGTTCTCATCAGAGGACGCAGGAATCGAATCCAAGCGGAGGTCACGGGCAGCACATCAGGCGGCTGAAAACACGAGACCAATGTTAGGAGGCCCAGATGCCAAGGGCGAATTTTTTTGAGCAACACTGGAGAGACGCCGCATAAACCGTCCTGTCGGCTCTCTATGATGGACTGTACTGTCAGCCGAACTCAGCGGCTGGGTTTCTGATGTAAAATATTGTGCATATTAcagacagatttatttttatatattaacatgtacatgtgtatatatatggagCTTGTGGAAGCATTTTAAATTAAAGGAAACAACTTGTGAACTGATTTTGGCTTTGTTATTTGCTGTACTTCCTTGGAAATGAATGTTGGGTGGTTGTGATTGAGAAATGAGGAAGTTGAAGATCCTTTTATGCCACTGAGGGAGAAGTGTTCGCAGCTGAAGCGCTTGTACGCTGTTTTCCGTCAGCTGAGAGTACGCTGGAATTTCCTGAGCAGGAAGAGCCATTCAGACATAATTGGCAATGCCGAACGTTCCCTGAATAAGGAACGTATTGGAGTTACACAATGCAGCTTTATGTAGAATTCTATCAGGGTTGTACATTTTCCCAATTCTCCCACATGAGTTATTTTGTTTTCCTAGAAAGAGGCCATTATGCTGATATTCTTAGAAAAGGGTGCAGTGTCTGATTCGTCATGTTACTTATTTAAAGGGATGGATCACTCAGAAATGAAAGTTACCTCAGTATTTGCTCAACctcaagtttctttttttttttttctgttgaacattatATTCTGAACAATGTTAGAAattggtaaccactgacttccataatgtAGGGGAAAAAAAGGAAGTCAATGACTGTTTCTATCCACCTGCATTTTGGAATATGACATAAAAAATAGTTAATGGAAATGCtaagatgcacataaaaaaaGCTTATTCGCACAACCGAGTAAGATAAACgttatattttctaaaatattactATATGCAAAATTTGCATAAACCACGATGCAGAAGGTCATAATTCGCACTCgttaaacaactttattttacattcttaggTGATACAAAACAGACGTTttggcacaatgccttcctcagtgcgTGAATCTTCCCAGCAGGcgcacaatgtcataagacgttaatattaggttggaTTTAGGTCATAATGTCAGCTGATCTAATAATGACGTTgaaatttggttgtttttaggttgtgttggaaagtgaccaaaatccactgtcgagccaacatcttaaaccaacatcatattgacgtcaaatactgacatttattcgtcaggtatacggcaaccaaaattcaacgtccacacaacatcaagctgtaacatcattagacgttgatattgggttgtttttaggttgtgttacaaagagaccaaaatctaacgtcgagccaacattttATGCCAACGTcacattgacgtcaaatactgaaatttattcgtcaggtatacGGCggccaaaattcaacatctgataaatatcatagtggtaacgtccacacaacataaacctgtaacatcattagacattgatatttggttgtttttaggttgtgttggaaagtgaccaaaatccaacattttaGGCCAATGTCATATTAACGTCAAATTCGGATATTTATTCGTCAGgaatagcaaccaaaatccatcgtctgataaacgtcatagtggtaacgcccACACATCATCAACCTGAAACATCAgatattgatatttggttgtttttagattgtgttgaaaagtgatcaaaatccaacgtcgagccaacattttAAGCCAACGTCATATTAACGTCAAATTCTGACGAAATTCTTATTTTGTTTTCCTAGAAAGAGGCTATTATGCTGATATTCTTAGAAAAGGGTGCAGTGTCTGATTCGTCATGTTACTTATTTAAAGGGATGGATCACTCAGAAATGAAAGTTACGTCagtatttactcaacctcaagtttcttttttttttttctgttgaacacattatATTCTGAACAATGTTAGAAattggtaaccactgacttccataatatagGGGGAAAAAAGGAAGTCAATGACTGTTTCTATCCACCTGCATTTTGGAATATGACAAAAAAATAGTTCATGGAAATGCtaagatgcacataaaaaaaGCTTATTCGCACAAATAAGTAAGATAAACgttatattttagaaaatataacTATATTCTATGCAAAATTTGCATAAACCACGATGCAGAAGGTCATAATTCGCACTCgttaaacaactttattttacattcttaggTGATACAAAACAGACGTTttggcacaatgccttcctcagtgcgTGAATCTTCCCAGCAGGcgcacaatgtcataagacgttaatattaggttggaTTTAGGTCATAATGTCAGCTGATCTAATAATGACGTTgaaatttggttgtttttaggttgtgttggaaagtgaccaaaatccactGTCGAGCCAACATcgtaaaccaacatcatattgacgtcaaatacttacatttattcgtcagatatacggcaaccaaaattcaacgtccacacaacatcaagctgtaacatcattagacgttgatattgggttgtttttaggttgtgttccAAAGAGACCAAAATCtaatgtcgagccaacattttATGCCAACGTcacattgacgtcaaatactgacatttattcgacAGGTAtacggcaaccaaaattcaacatctgataaatatcatagtggtaacgtccacacaacattaacctgtaacatcattagacattaatatttggttgtttttaggttgtgttggaaagtgaccaaaatccaacattttaagcaaatgtcatattgacgtcaaattcGGATATTTATTCGTCAGgaatagcaaccaaaatccatcgtctgataaacgtcatagtggtaacgcccACACATCATCAACCTGAAACATCATCAgatattgatatttggttgtttttatattgtgttgaaaagtgaccaaaatccatcgTCGAGCCAAAATTTAAGCCAACCTCATATTAACGTCAAATTCTGACGAAATTCTTGTCAGGTTTACAGCAACCAAAGTCCAACATTGAtaaacgtcatagtggtaacgtcataagacgttgatatttggttgtttttagtttGCATAGCAAaataaccaaaatgcaacgtctgtttaaatctgacgtcatgttgatgtcctgtgcctacTGGGTTCTCTCTCCACCCTCTTATGCCAGTCAACCACGTAATTAATTAGAGGACTACTcaatagttaaaaaaaacgtTTCTCTCTGCTCGTTTTCATTTCAATATAGCTAAC
>TCONS_00022540
TCTTTTAACTCTCAGAAAAGCTTCATAGTCCAGACACAAACTGCAGACCGTGAAACATGGAGCTTTACCGAGGCACCACTGCCAACCAAACGGATTATAATGACGACGGTCGCGGCCCCAAATCTGGGAAATTGCTCTCAAACACCGACGAGCGTTTGGACAGCGGGTTGGATTCGTTAAAAGAGGACAATCTTCCGTCGCTTGAGGAATGCAGAATCACGGACTTTGTCGGGCCGACGGACGAGCCCTGGAAGAAAGAGCTCACCGAGGACGGAGACACgTATCTACATCTCGCCATTATCCACGAGGCCACAGATGCTGCACTAAAAATGATTGCGTTATCCCGAAGAGACCCTTTCCTCAATATACAAAACAACCAGAGACAGACTGCACTGCATTTGGCCATCATCACAGATCAGCCTCTCATAGTGGAGCAGTTACTAAAAGCCGGCTGCGATGCATCTTTGGTGGATGACCATGGTAATACTGCACTCCATATCGCCTGCAGGAAAGGATCTCTGGCCTGCTTCGGCCTCCTAACACAAGGCTGCTCGCAGCACCTCTCAGCCATCCTCCAGACACCAAACTATAATGGTCAGAAATGCATACACGTGGTCGCCATCCAGGGTTACTTGTCATTGTTGGAAAGCCTCATCCAGCTCGGCGCAGATATAAATGCAcagGAGCAGTGTAACGGCCGAACCGCTCTCCACCTCGCCGTGGACCTCCAAAACTTTGACATGGTCAAACTTCTCATCGAAAAAGGTGCCAGTGTTCACAGTGTCACATACGGCGGTCACACGCCTTATCACCTGACCTACGGCCGGTCGAACGCTGACATCCAAAAAGTCCTGTATGAGCTCACGTCGCCACACCTAAGGGAACTTCCAGAGAGTGACTCAGAAGATAGTGAGGATAGCGACGAGGATTATGAAGAGCGCTGTCAGTCTGAGGTGGAAGACCTGTAtgatgatattaaagtgatggggCAGTAGGACTTGTGTGTCGAATGGAGATGAAAAGAGATGAACGTTCTCATCAGAGGACGCAGGAATCGAATCCAAGCGGAGGTCACGGGCAGCACATCAGGCGGCTGAAAACACGAGACCAATGTTAGGAGGCCCAGATGCCAAGGGCGAATTTTTTTGAGCAACACTGGAGAGACGCCGCATAAACCGTCCTGTCGGCTCTCTATGATGGACTGTACTGTCAGCCGAACTCAGCGGCTGGGTTTCTGATGTAAAATATTGTGCATATTAcagacagatttatttttatatattaacatgtacatgtgtatatatatggagCTTGTGGAAGCATTTTAAATTAAAGGAAACAACTTGTGAACTGA
>TCONS_00022541
AACTGCAGACCGTGAAACATGGAGCTTTACCGAGGCACCACTGCCAACCAAACGGATTATAATGACGACGGTCGCGGCCCCAAATCTGGGAAATTGCTCTCAAACACCGACGAGCGTTTGGACAGCGGGTTGGATTCGTTAAAAGAGGACAATCTTCCGTCGCTTGAGGAATGCAGAATCACGGACTTTGTCGGGCCGACGGACGAGCCCTGGAAGAAAGAGCTCACCGAGGACGGAGACACgTATCTACATCTCGCCATTATCCACGAGGCCACAGATGCTGCACTAAAAATGATTGCGTTATCCCGAAGAGACCCTTTCCTCAATATACAAAACAACCAGAGACAGGTACATCAGTGAGATTTGAGATTTTTCATATACACATCAACCAGTTAATGACTTGAAATACTAAAGCCCTCCCTCCTCTGTTGGTATTTCAGACTGCACTGCATTTGGCCATCATCACAGATCAGCCTCTCATAGTGGAGCAGTTACTAAAAGCCGGCTGCGATGCATCTTTGGTGGATGACCATGGTAATACTGCACTCCATATCGCCTGCAGGAAAGGATCTCTGGCCTGCTTCGGCCTCCTAACACAAGGCTGCTCGCAGCACCTCTCAGCCATCCTCCAGACACCAAACTATAATGGTCAGAAATGCATACACGTGGTCGCCATCCAGGGTTACTTGTCATTGTTGGAAAGCCTCATCCAGCTCGGCGCAGATATAAATGCAcaggtaaaaaaaatattcaaagcatATTAaaagtagttcacccaaaacgaaAATATTCCCACCGTTTGCTCACAATAGAGTTGCTATAGACTTTATAG
>TCONS_00022542
GTTCTCTGCACACCAAAAAAAGCTTTGTTTCACAGATAAAAATGCTCTCACAGTTGCTTAACCATgcatatctttatcttttaaaggTATCTACATCTCGCCATTATCCACGAGGCCACAGATGCTGCACTAAAAATGATTGCGTTATCCCGAAGAGACCCTTTCCTCAATATACAAAACAACCAGAGACAGACTGCACTGCATTTGGCCATCATCACAGATCAGCCTCTCATAGTGGAGCAGTTACTAAAAGCCGGCTGCGATGCATCTTTGGTGGATGACCATGGTAATACTGCACTCCATATCGCCTGCAGGAAAGGATCTCTGGCCTGCTTCGGCCTCCTAACACAAGGCTGCTCGCAGCACCTCTCAGCCATCCTCCAGACACCAAACTATAATGGTCAGAAATGCATACACGTGGTCGCCATCCAGGGTTACTTGTCATTGTTGGAAAGCCTCATCCAGCTCGGCGCAGATATAAATGCAcagGAGCAGTGTAACGGCCGAACCGCTCTCCACCTCGCCGTGGACCTCCAAAACTTTGACATGGTCAAACTTCTCATCGAAAAAGGTGCCAGTGTTCACAGTGTCACATACGGCGGTCACACGCCTTATCACCTGACCTACGGCCGGTCGAACGCTGACATCCAAAAAGTCCTGTATGAGCTCACGTCGCCACACCTAAGGGAACTTCCAGAGAGTGACTCAGAAGATAGTGAGGATAGCGACGAGGATTATGAAGAGCGCTGTCAGTCTGAGGTGGAAGAC

Function

symbol description
nfkbiab Is expressed in EVL; epidermis; lateral line system; vent; and ventricular zone. Human ortholog(s) of this gene implicated in several diseases, including childhood-onset asthma; hematologic cancer (multiple); hepatitis B; hepatitis C; and lung disease (multiple). Orthologous to human NFKBIA (NFKB inhibitor alpha).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1819 Is expressed in EVL; epidermis; lateral line system; vent; and ventricular zone. Human ortholog(s) of this gene implicated in several diseases, including childhood-onset asthma; hematologic cancer (multiple); hepatitis B; hepatitis C; and lung disease (multiple). Orthologous to human NFKBIA (NFKB inhibitor alpha).

Ensembl:

ensembl_id ENSDARG00000007693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022539 False 5069 mRNA 0.39 5 12942021 12949754
TCONS_00022540 False 1354 mRNA 0.49 6 12942634 12946736
TCONS_00022541 False 832 lncRNA 0.47 3 12942672 12944281
TCONS_00022542 True 768 lncRNA 0.49 4 12943519 12946260

Neighbor

gene id symbol gene type direction distance location
XLOC_011298 NA coding upstream 4100 12937520 ~ 12937921 (+)
XLOC_011295 ralgapa1 coding upstream 18447 12767640 ~ 12923574 (+)
XLOC_011297 BX649530.2 coding upstream 73077 12868830 ~ 12868944 (+)
XLOC_011296 BX294369.1 coding upstream 140442 12801464 ~ 12801579 (+)
XLOC_011294 lrrc57 coding upstream 194186 12737389 ~ 12747835 (+)
XLOC_011300 ppp2r3c coding downstream 57534 13007288 ~ 13019643 (+)
XLOC_011301 fbxo33 coding downstream 81743 13031497 ~ 13038751 (+)
XLOC_011302 gemin2 coding downstream 138840 13088594 ~ 13098319 (+)
XLOC_011303 pnn coding downstream 149722 13099476 ~ 13110121 (+)
XLOC_011304 NA coding downstream 272078 13221832 ~ 13601942 (+)
XLOC_011286 NA non-coding upstream 663492 12260902 ~ 12278529 (+)
XLOC_011282 NA non-coding upstream 804269 12135990 ~ 12137752 (+)
XLOC_011306 BX005443.1 non-coding downstream 863669 13813423 ~ 14059995 (+)
XLOC_011311 NA non-coding downstream 1885294 14835048 ~ 14839214 (+)
XLOC_011313 NA non-coding downstream 1983512 14933266 ~ 14933817 (+)
XLOC_011315 NA non-coding downstream 2060883 15010637 ~ 15013476 (+)

Expression


Co-expression Network