XLOC_011305 (lrfn5a)


Basic Information

Item Value
gene id XLOC_011305
gene name lrfn5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 13664442 ~ 13780499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022550
aaaaaaaaaaaaaaaaactggaaccATATGGGAGCATTAGTGGACCGGTCTGTGTTGCTGGGAGGAGCATACTTCTGCTCAGCGTCCCATGTGTGTTACATCGACTTATCGGAGACATTTCGAGTTATTAATCCATCTTCAGTCGCGTGTGGAGAGCGCTCGCCGCCTGAGGAGAACGCACTTTTGATATACCTTTTGGATGGAGGGAAGGCGCGGAAGGCAGTGACTGTGTGGATTAAGCAGGCGGGGAAGTACTTGTAAAAAAGGTGCTTTGGTGAAAAGGTCTCCCTGTTGAGATTTGATTTGACTTGCCGGGTTTTAATGCGGACGAAAGCTCGCGCTCGACCGAGGTGCGTCGACGGGCGGGAGGAGAATGGCACGAGCTTCCGCGCTTCTGAGAGGAAAACAAGTACTTGGCTTTCTTGAGGGGCGTCGGGCACATCGCGCAGGAATTTGACTGTCCCTCAGAGTGCGTATTTTGGAGATATTTATCTGTTACGTCGAAAGGAAGAGAGAAAAAAACGTTTGGATTTTAGTGTCTTTGGATATGGGCTTTGGGGAGTTGGATGCCTTCATATCACGCGCACCTTTGAATTCAGCGTGAATCCAGTGGAGCACAACATGGGAAAATAATGACAAGTGAGAAGATTCGGTTCCTCTGACCCTCGGTGCTTCAAGCAGGACTGGCGTTCCTTCAGCTAGGTGTAAAAACCTGAATTACAATGGAAAAACTGCTCGTCTGCTTGTTGGTTATCGGAATGGCAGTGAAGGCCCAGATCTGTCCAAAGCGCTGCGTCTGTCAGGTTCTTTCCCCCAACCTCGCAACACTCTGTGCCAAAAAAGGGCTGCTCTTCGTCCCCCCTAACATCGACAGGCACACCGTGGAGCTCCGGCTAGCTGATAATTTTGTCACCAGCGTCAAACGGAAAGACTTGGCCAACATGACCAAGCTGGTGGATCTTACGTTATCCAGGAATACAATAAGCTACATCACTCCACATGCATTCGCAGACCTGGAAAACCTACGAGCCTTGCATCTAGACCACAACCGCTTGACGCGAATAGCCAACGACACTTTCAGTGGCATGTCCAAGCTGCATCATCTAATCCTGAACAACAACCAACTGACCCTCATCCACATGGGAGCCTTTAATGACCTACTAGCCCTCGAAGAGCTGGATTTATCCTACAACAACCTCGAGACCATCCCCTGGGAGGCCATTCAAAGGATGACCAGCCTACACACTCTCAGTCTGGACCACAATATGATTGAATACATTCCTGAGGGGACGTTCTCCCTCCTACAGAAGCTCAATCGCTTGGACGTGACCTCCAACAAGCTCCAGAAGCTCCCACCGGACCCTCTTTTCCAACGAGCACAGGTTCTGGCAACATCCGGCATTATGAATCCCTCTTCTTTTGCGCTAAGCTTCGGAGGCAATCCTTTACATTGCAACTGCGAGCTACTGTGGCTTCGGCGGCTCAATCGCGAGGACGACTTGGAGACCTGCGCCACACCTTTGCACCTCTCTGGACGCTATTTCTGGTCCATCCCCGAGGAGGAGTTCCTCTGTGAGCCGCCCCTCATTACCAGGCACTCTCACGAAATGAGGGTTCTGGAGGGCCAACGAGTGGCATTAAAGTGCAAAGCCAGGGGAGATCCCGAACCTGCCATACATTGGATATCTCCCGAGGGAAAGTTAGTCTCGAACACGTCACGCACGCTGGTTTACAACAACGGCACGCTGGACATCCTGATAAGCACAGTAAAAGACACAGGCTCTTTCACCTGCATCTCCTCCAATCCTGCAGGGGAGGCTCATCAGACCATAGAGCTGGTCATCATTAAGCTTCCACACATCAGCAACAGCACAAATAACATCCAGGAGCCGGACCCGGGCTCTTCTGATATCTCCACTTCTACAAGGGCAGGAGCAAACGGTGGCAACCACACCGGTGACACCAAGACCAGCTCCGATAAGAGAGTGGTTATGGCAGAAGCCACTTCCTCCACGGCACTCATCAAGTTCAACTTTCAGAGGAATATACCTGGAATACGCATGTTTCAGATTCAGTACAATGGAACCTACGATGACTCTCTTGTTTACAGAATGATTCCCCCAACGAGTAAAAACTTCCTTGTGAATAACCTGGCGGCCGGGACACAGTACGACCTTTGTGTGCTGGCCATTTATGATGATGGCATGACCTCCCTGACGGCCACGCGGGTTGTGGGCTGCGTCCAGTTCACCACAGAGTCTGAATATCTGCGCTGCCACTTCATGCAGTCCCAGTTCTTAGGCGGCACTATGATCATCATCATCGGTGGCATAATCGTGGCCTCCGTCCTcgtcttcatcatcatcctcatgatCCGCTATAAAGTGTGCAACAGCGGCGACGCAGCAAAGGGAACGTCAGTCATCGATGTGCACTCACAAACCAACGGTGCGCAAGGATGTACCGTCACTCCGTCTGCATCCAAACAAGGTGCTTTGAGCTTGGAGGAGGGTGAGGGGGGCAAAAAGAGCTCCGCCGCACCTCTTCCTCCACCTCCGGATTCCCAAACGCACACCTCAGAGACCTCCATCCCAGACTGCTCCACCTCCACCTCCACGGTAAGTCAAAGCTGGGCGACTCCCGGCTCTTCAGGGTCACTAAAGCCAAAGCGCAAACCAGCGCCAAAGCCCGTCCCGACAGCTGAGCAGCCCAAAGCAGAAGTGCTGCCCAATGCAGAGACGCAAAATACCAATCGCAACAACTCCACCGCCCTTTACCAACCTGCCCCACTCCCTCCACCCCCGTCCCGCTTCAAAGACACCCCCATTTTAAGAAGGGCGCGTCCGTCTACGTCCAAGTATATGACTCTGCCCGTTGAAGGAGCGTGGGCCAAACGCAGGTACTCTTTGAACGAGAACCTGTCAAAACATCACTGCTACATTGGCTCGCAGAAGCTGGGAAATGTGTTTTGCAAGCGGAGTATGTCCATGAACGGAATGCTTGTCCAAATGGCAAACTCTAATCTAGACAGTGAAAAAGCGGCATTTTCCAGTTCCGAGTGGATTCTTGAGAGCACAGTGTGA
>TCONS_00022551
ATGGAAAAACTGCTCGTCTGCTTGTTGGTTATCGGAATGGCAGTGAAGGCCCAGATCTGTCCAAAGCGCTGCGTCTGTCAGGTTCTTTCCCCCAACCTCGCAACACTCTGTGCCAAAAAAGGGCTGCTCTTCGTCCCCCCTAACATCGACAGGCACACCGTGGAGCTCCGGCTAGCTGATAATTTTGTCACCAGCGTCAAACGGAAAGACTTGGCCAACATGACCAAGCTGGTGGATCTTACGTTATCCAGGAATACAATAAGCTACATCACTCCACATGCATTCGCAGACCTGGAAAACCTACGAGCCTTGCATCTAGACCACAACCGCTTGACGCGAATAGCCAACGACACTTTCAGTGGCATGTCCAAGCTGCATCATCTAATCCTGAACAACAACCAACTGACCCTCATCCACATGGGAGCCTTTAATGACCTACTAGCCCTCGAAGAGCTGGATTTATCCTACAACAACCTCGAGACCATCCCCTGGGAGGCCATTCAAAGGATGACCAGCCTACACACTCTCAGTCTGGACCACAATATGATTGAATACATTCCTGAGGGGACGTTCTCCCTCCTACAGAAGCTCAATCGCTTGGACGTGACCTCCAACAAGCTCCAGAAGCTCCCACCGGACCCTCTTTTCCAACGAGCACAGGTTCTGGCAACATCCGGCATTATGAATCCCTCTTCTTTTGCGCTAAGCTTCGGAGGCAATCCTTTACATTGCAACTGCGAGCTACTGTGGCTTCGGCGGCTCAATCGCGAGGACGACTTGGAGACCTGCGCCACACCTTTGCACCTCTCTGGACGCTATTTCTGGTCCATCCCCGAGGAGGAGTTCCTCTGTGAGCCGCCCCTCATTACCAGGCACTCTCACGAAATGAGGGTTCTGGAGGGCCAACGAGTGGCATTAAAGTGCAAAGCCAGGGGAGATCCCGAACCTGCCATACATTGGATATCTCCCGAGGGAAAGTTAGTCTCGAACACGTCACGCACGCTGGTTTACAACAACGGCACGCTGGACATCCTGATAAGCACAGTAAAAGACACAGGCTCTTTCACCTGCATCTCCTCCAATCCTGCAGGGGAGGCTCATCAGACCATAGAGCTGGTCATCATTAAGCTTCCACACATCAGCAACAGCACAAATAACATCCAGGAGCCGGACCCGGGCTCTTCTGATATCTCCACTTCTACAAGGGCAGGAGCAAACGGTGGCAACCACACCGGTGACACCAAGACCAGCTCCGATAAGAGAGTGGTTATGGCAGAAGCCACTTCCTCCACGGCACTCATCAAGTTCAACTTTCAGAGGAATATACCTGGAATACGCATGTTTCAGATTCAGTACAATGGAACCTACGATGACTCTCTTGTTTACAGAATGATTCCCCCAACGAGTAAAAACTTCCTTGTGAATAACCTGGCGGCCGGGACACAGTACGACCTTTGTGTGCTGGCCATTTATGATGATGGCATGACCTCCCTGACGGCCACGCGGGTTGTGGGCTGCGTCCAGTTCACCACAGAGTCTGAATATCTGCGCTGCCACTTCATGCAGTCCCAGTTCTTAGGCGGCACTATGATCATCATCATCGGTGGCATAATCGTGGCCTCCGTCCTcgtcttcatcatcatcctcatgatCCGCTATAAAGTGTGCAACAGCGGCGACGCAGCAAAGGGAACGTCAGTCATCGATGTGCACTCACAAACCAACGGTGCGCAAGGATGTACCGTCACTCCGTCTGCATCCAAACAAGGTGCTTTGAGCTTGGAGGAGGGTGAGGGGGGCAAAAAGAGCTCCGCCGCACCTCTTCCTCCACCTCCGGATTCCCAAACGCACACCTCAGAGACCTCCATCCCAGACTGCTCCACCTCCACCTCCACGGTAAGTCAAAGCTGGGCGACTCCCGGCTCTTCAGGGTCACTAAAGCCAAAGCGCAAACCAGCGCCAAAGCCCGTCCCGACAGCTGAGCAGCCCAAAGCAGAAGTGCTGCCCAATGCAGAGACGCAAAATACCAATCGCAACAACTCCACCGCCCTTTACCAACCTGCCCCACTCCCTCCACCCCCGTCCCGCTTCAAAGACACCCCCATTTTAAGAAGGGCGCGTCCGTCTACGTCCAAGTATATGACTCTGCCCGTTGAAGGAGCGTGGGCCAAACGCAGGTACTCTTTGAACGAGAACCTGTCAAAACATCACTGCTACATTGGCTCGCAGAAGCTGGGAAATGTGTTTTGCAAGCGGAGTATGTCCATGAACGGAATGCTTGTCCAAATGGCAAACTCTAATCTAGACAGTGAAAAAGCGGCATTTTCCAGTTCCGAGTGGATTCTTGAGAGCACAGTGTGA

Function

symbol description
lrfn5a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; mesoderm; nervous system; pancreatic system; and tail bud. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-17 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; mesoderm; nervous system; pancreatic system; and tail bud. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).

Ensembl:

ensembl_id ENSDARG00000071230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022550 False 3083 mRNA 0.52 4 13664442 13780499
TCONS_00022551 True 2361 mRNA 0.53 2 13763425 13780499

Neighbor

gene id symbol gene type direction distance location
XLOC_011304 NA coding upstream 62500 13221832 ~ 13601942 (+)
XLOC_011303 pnn coding upstream 554321 13099476 ~ 13110121 (+)
XLOC_011302 gemin2 coding upstream 566123 13088594 ~ 13098319 (+)
XLOC_011301 fbxo33 coding upstream 625691 13031497 ~ 13038751 (+)
XLOC_011300 ppp2r3c coding upstream 644799 13007288 ~ 13019643 (+)
XLOC_011306 BX005443.1 coding downstream 32924 13813423 ~ 14059995 (+)
XLOC_011307 ccdc175 coding downstream 644720 14425219 ~ 14442570 (+)
XLOC_011308 gpr135 coding downstream 671830 14452329 ~ 14458667 (+)
XLOC_011309 cx28.6 coding downstream 931266 14711765 ~ 14712599 (+)
XLOC_011310 rtraf coding downstream 1003759 14784258 ~ 14794741 (+)
XLOC_011298 NA non-coding upstream 726521 12937520 ~ 12937921 (+)
XLOC_011297 BX649530.2 non-coding upstream 795498 12868830 ~ 12868944 (+)
XLOC_011296 BX294369.1 non-coding upstream 862863 12801464 ~ 12801579 (+)
XLOC_011286 NA non-coding upstream 1385913 12260902 ~ 12278529 (+)
XLOC_011311 NA non-coding downstream 1054549 14835048 ~ 14839214 (+)
XLOC_011313 NA non-coding downstream 1152767 14933266 ~ 14933817 (+)
XLOC_011315 NA non-coding downstream 1230138 15010637 ~ 15013476 (+)
XLOC_011316 NA non-coding downstream 1248760 15029259 ~ 15030379 (+)

Expression


Co-expression Network