XLOC_011311


Basic Information

Item Value
gene id XLOC_011311
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 14835048 ~ 14839214 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024626
gttttttctgaatgcttctttaatgtacaagtggttcaaactcactcatttCGAGGCAGGAAGCAGCGGACGTGcaacataagTTGCGTCCGTCTCCTCTGTAACCTGTGGCACATTGGCAAGAAAACAGCTGTCCTTCACCTGGCACACATCGAGCCGTTGTATCACAGTCGTGATTTCCAGAGTAACAGGGGTTTACGTTTTCTGGCTCGGGATCTACAGCTGTGAAAGGATGAAAAGATACCAAACTAACTCACCACGATGGGGAACACTGGAAATATGACTCACAGATGCATGAGTCACTGCAGATGTTTTAAATCCTCTGGCCAAAGTCAGCATCCTGAGGCTACGTCTACAGCAATCCGGATACATGTGACCTACCATGAGGCACCCATCGGTGGGACCCTTGGGCAACCTTCACCCCCACCCAACGCCTACTCATCACGCATTAAAAACAGCTTGATTTCCTCACCCCGGGCCAGGGACCAATTTGGCCAATTATCAAAGCCAGACAGGAAGACTTTTGTTTGaagtgagagagagggagaaagacgGTCCCCCTTTAAAGTGACTCCACAGGGGAGGCGGGAAAAGTGGAGAGAAACTAAAGGACAAACGTTGCCAAAGTGTGTCGGGGGCTTCTTTTTAACTCTGTGCTAATTAAAGGGACAGGGGCCGAGCAGTGGGGCGGGGGGCTGGTTTACACAGGACTTTGAGGAAAACCAAGGGGGAGGACGAACCAGGTGGGCAACACTCAACAAAACTTGCGTTAAGAGTGTGTGAAAGAGGGCTTTCGGAGCTCAGAGGAGTTTGTGAAAGAACAAATAAAAGAGGCTACTCAAACCTAAACACAATGACCTTCGCTGTTAGGCTCATTCATTGTCTGTCAGCTATAACGTGCATTTTCCTCAGGTATGATTAAAATGTCTGCCATTGTTGATCATCAAATGTTTAGGGTAATTTAAAGAGATGAAACATAATTTTCAAACAtgaaaattctttcatcatttactcactcttcagtGGATAAAAACCTATTTAAGTtcgtttcttctgttgaacacaaaagaaggtattttgaaaaatgttggtggCTGGTGCCcaatgactttcatagtatttttttttttcaaatgtggaagttgatgggtgccagcaaccagcattctgcaaaatatcttcttttgtcctcaacagaagaaagaaactcgtaaagatttaaaactaaccatatgattttgttagcgcacattgccagttttgtggtgaacaattaatctgtgcatgtcattaaaaaaataaataaataaattgtttaccc
>TCONS_00022560
GAAGCAGCGGACGTGcaacataagTTGCGTCCGTCTCCTCTGTAACCTGTGGCACATTGGCAAGAAAACAGCTGTCCTTCACCTGGCACACATCGAGCCGTTGTATCACAGTCGTGATTTCCAGAGTAACAGGGGTTTACGTTTTCTGGCTCGGGATCTACAGCTGTGAAAGGATGAAAAGGCAAATTAATCCACAAAAAATAAGCtgattcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024626 False 1321 lncRNA 0.43 4 14835048 14839214
TCONS_00022560 True 214 lncRNA 0.47 2 14835107 14836378

Neighbor

gene id symbol gene type direction distance location
XLOC_011310 rtraf coding upstream 40307 14784258 ~ 14794741 (+)
XLOC_011309 cx28.6 coding upstream 122449 14711765 ~ 14712599 (+)
XLOC_011308 gpr135 coding upstream 376381 14452329 ~ 14458667 (+)
XLOC_011307 ccdc175 coding upstream 392478 14425219 ~ 14442570 (+)
XLOC_011306 BX005443.1 coding upstream 775053 13813423 ~ 14059995 (+)
XLOC_011312 ptger2a coding downstream 47614 14886828 ~ 14894144 (+)
XLOC_011313 NA coding downstream 94052 14933266 ~ 14933817 (+)
XLOC_011314 gpr137c coding downstream 126356 14965570 ~ 15012127 (+)
XLOC_011315 NA coding downstream 171423 15010637 ~ 15013476 (+)
XLOC_011316 NA coding downstream 190045 15029259 ~ 15030379 (+)
XLOC_011304 NA non-coding upstream 1233106 13221832 ~ 13601942 (+)
XLOC_011298 NA non-coding upstream 1897127 12937520 ~ 12937921 (+)
XLOC_011297 BX649530.2 non-coding upstream 1966104 12868830 ~ 12868944 (+)
XLOC_011296 BX294369.1 non-coding upstream 2033469 12801464 ~ 12801579 (+)
XLOC_011319 CU464134.1 non-coding downstream 317999 15157213 ~ 15169715 (+)
XLOC_011320 NA non-coding downstream 345819 15185033 ~ 15185293 (+)

Expression


Co-expression Network