XLOC_011323


Basic Information

Item Value
gene id XLOC_011323
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15297233 ~ 15318217 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022574
GACTTCCTTCATCAGTCGTGTGTCATCACAACAAACACTGCCCAGAGGAGTGGATAAAAACAGCCCCGTCCTGTGCTGTTCTCACATCCACCGCCCTCCTGTGTGTTTTCCACACCCCTTTCAATCCCTCCTATAAACTTTGCAGCATGTCCCAAGAGCCAGTGTGTCTACATTTCCTGCTGCTTCACAATCATCCTTATAAAGGACTGTTTCTTTCTTTGGCTGCCATTCGACGGCACCACTGGACCAGCACCAGCCTCATCATCTCCACTGCTCTCACTGCCGATAGTCTGCACTTTTGACTGTCAGGATGGAGCGGGTGCAGCATATGACGCGCTCTGCGATCCGGAGAGCATCCAACATCGAGGTGAACCCGCAGACCAAACGCAACCTACAGGATCTCATCATCAACTTCTCCCTCATCCTAATCTGCCTGCTGCTCATCTACATCATCGTCTTGCTCATGTGACACCGAAAAACACAACCACAAATCATAAGACGCGTTCAAGATCTTGGACGATTTTTTAAGGGAATTGAAAATGACGCGACACATTTCAGTTTGctgagatgattttttttttgctccatttgtgtttgttttgcattAATCTTACGTTGATAAGTATATGTTTGAAGCATTGAATGGCACTGAGTACAAGTCTGCTTTTGTTCTCTGAATCATGTGTTTTCTATTTGTAGTGATTCATAGgaatatcgtcaccttggaataaAGGTTATATCTGAGAGGGTTTGAGATactgagttttaaaaaaaatatcctaaaaaaataaaataaaatcgatCCCCGAGTCTTTTCCCCTCCTGAAGACAAAAGAACCTGTTTTGAACAATGTTGGAATCCGGTAACCATTGAGatcaatagtaatttttttttgtatggaagtcaatggttaccggtttccaacaagTTCTTTTCAATGTTTTTGTGTACTACACCAaatagaaactcaaacaggttttgcaacccaggctcattatttaATCGTagctctgtatacatttctggagagcacaaaatacgtcccaggaggtactctttttgcagttttgttttcgcgaattcatCACTGTGAACACTTttccagatctcaaatttctcttgcgagggccattcgcacctgctgttctcacgtaaagcCGCTGTCAGCTGACTGACTGACACTCCCACTGACCCCCTTCTCTAAAgccaaccgataatgttttcaaaagcacagattagacccgcccacccacttccctaaaccccacCCACTtctataaacccaaccaatagtttttttaaaagcaatgcagaaaaagaaaagccctcgtgaccacctgatttttaccatgttttcagatcttacctaattctcaccctgttatttacttgtttattttattctttggcttctgtttttgttttacctgctttctggaatcgttcttcaccagactcgaaccccattgtcacggtcaactcctctctgcatttcaagtccaccgacataAGCAGCGAGCCACTAGGAAAACTGATAACAgtagaaaagccgtccacacttGAGGTAAGCGGCCAGCTGGTAgtgcaaaaaagaaacaaacttgTTGGTGGCATCATACTGTACCAAACTATATTGTTCATTTTAGAGACAAAATGCAGACATACattgctctggctacataattcacgctctccagaaatgtatacgggggtgtGTTTTCACAATGTGCCTGTTGGGTTTTTGACAAGTAGAGAAGAGTaatgttgacagaattttcagttttttagtgaactatcttTTAAAGTTTTGTCCATTCCATACAGCAAAAATGCCATGTAGGAGAAGTAATTTTCAttgatgaaaataaaagaaactttaaatgtaaatgttaaatatttttaaaaaatgtttaatactcTCCAATTTATAAATGGGGATTTTTGTAACAGGTCAAATGGTGTCGTCTAattctaaacaaataaaatcactttCCATTTGAAATGCTGTTTCTATCAgtgtatttatattaaaatactgtaaacacttcatatattttgtttaaaatataaacttaGAATTATTACAATTTATCAACATGACAATTTACATGTAATGCTGATTTATTCAAAATTTTTAGGAAAAATGTTATTGCTGGAATTGTTGGTTAATGTTTCTTTGGTTACACAAAGACCCAATCAATTCAATTGTTagatatttaacttttaaagtTTAAACGGATAGTTCATCCAAACTTCAACATTCACATTCTATTTACTCATTATTTGGTTCTATCCAaacctttatttctttattcttttgaacacaaaagctgAAAACAGGTAAGCATCGACTTTcatagaaaaaacaaaataacaggggtgtccaaacgtcggtgtagcagtcgattctgttcccttctggaattccagttccggcgtcctggagattttagctccaacttgcttcaacatcctgcaaggatgtttctagaattcTAGaaaggatcgagtttatatgtatgtgcgtgtgtatgtgggtgtattcatgcgtcaagtttatatgtatatacacaagtttcatctatgttgttttgaacatccagtagtataggtgtatatgcgagtaatttataggtgtatgtacatgtgttttatgtatgtgttgataagcaaagtttgatttaaatcctaaaGGGCAACTCAAAGAAGTTTTTGTATTAATGAATTATAAAAATTGTCATGTAAAACTTCTAAgacaatacaaatattaaatatttccaGCTACTTCATTCTTACCTTGCTCTTGTTCAACGCGGTGAAACAACAACAAACGACGCCCTCTCTTCCTGATGAAATCCGCGCGCATTGTTTTTCCAATAAGCTCCGCCTACTTTAATTTGATTGGCCATCATTCGGACATTAATTGAAAATGAATGTCATTTTTGATCGTGGCTATTGTGTTGAAATGCTAATGTATAGAGCTGTCCTTAAAATCATATATTATTTACCTTAAAAATGTGAGGTACTGAAACTAAGCTTGTACGCAGGGATGggcaaaatacattaaaatgtattttaaaataaaatagcctACAAAATACATCAattttaaatgtatcaaaataaactacaaaatacagcagccacaaatgtatcaaaataaaatactgtgttTTGAACATACTGCAGAGTTCTTTTTATAAAGGAGCATGACATTTCTTTATAAACCTTCTATCGACAAGCCTATTCGATCAATTATCTTACCTTTAAACTGACTTAGTAAAGTAAATAATGATATATTGCAACAGCATTTCTCAgagcaagtttaagtcagcttctctgccAACTCATTCACCTCTACTGTACAGGAAcaggacagtgctaaccactgatccactaTACTGccctcatttaatttttttcttcacatattttttgataaattaatttttttgcaattgaaatctttcatacttaatgtaaaaaacatgatttctgaaaactactaaaatCTCCAGTTTTAGTAATGATATCTCTATAAAATGGAgctgtttttgcaaataaactctggAGCTTTTGACCAGACTGTATAGActggagtattattaaatatttgtgtctcATTCACTACATTCTTCCACTTTACATCTTTTTTTCTTCAATTACTATAAAGAGCTACCGCAGATAAGCTATTGTGAATCGCCACTGTAGGACTgtatgttgtttgtcttattttcttggCATCTACATCAGCAATCAATCTAAAACTACTATTATTTGTGCAGTTTACTGATCCTGCCTATGTTTTCAGTTCTTTTTAAACTGGAAGAGTCTCAGTTTACCCCCTTAGTGAACACCAGTACAGGATCTTTGGGTGTTTTATTATTCTAAAGTTCTTCTGCGTttccacctgca
>TCONS_00024635
GACTTCCTTCATCAGTCGTGTGTCATCACAACAAACACTGCCCAGAGGAGTGGATAAAAACAGCCCCGTCCTGTGCTGTTCTCACATCCACCGCCCTCCTGTGTGTTTTCCACACCCCTTTCAATCCCTCCTATAAACTTTGCAGCATGTCCCAAGAGCCAGTGTGTCTACATTTCCTGCTGCTTCACAATCATCCTTATAAAGGACTGTTTCTTTCTTTGGCTGCCATTCGACGGCACCACTGGACCAGCACCAGCCTCATCATCTCCACTGCTCTCACTGCCGATAGTCTGCACTTTTGACTGTCAGGATGGAGCGGGTGCAGCATATGACGCGCTCTGCGATCCGGAGAGCATCCAACATCGAGGTGAACCCGCAGACCAAACGCAACCTACAGGATCTCATCATCAACTTCTCCCTCATCCTAATCTGCCTGCTGCTCATCTACATCATCGTCTTGCTCATGTGACACCGAAAAACACAACCACAAATCATAAGACGCGTTCAAGATCTTGGACGATTTTTTAAGGGAATTGAAAATGACGCGACACATTTCAGTTTGctgagatgattttttttttgctccatttgtgtttgttttgcattAATCTTACGTTGATAAGTATATGTTTGAAGCATTGAATGGCACTGAGTACAAGTCTGCTTTTGTTCTCTGAATCATGTGTTTTCTATTTGTAGTGATTCATAGgaatatcgtcaccttggaataaAGGTTATATCTGAGAGGGTTTGAGATactgagttttaaaaaaaatatcctaaaaaaataaaataaaatcgatCCCCGAGTCTTTTCCCCTCCTGAAGACAAAAGAACCTGTTTTGAACAATGTTGGAATCCGGTAACCATTGAGatcaatagtaatttttttttgtatggaagtcaatggttaccggtttccaacaagTTCTTTTCAATGTTTTTGTGTACTACACCAaatagaaactcaaacaggttttgcaacccaggctcattatttaATCGTagctctgtatacatttctggagagcacaaaatacgtcccaggaggtactctttttgcagttttgttttcgcgaattcatCACTGTGAACACTTttccagatctcaaatttctcttgcgagggccattcgcacctgctgttctcacgtaaagcCGCTGTCAGCTGACTGACTGACACTCCCACTGACCCCCTTCTCTAAAgccaaccgataatgttttcaaaagcacagattagacccgcccacccacttccctaaaccccacCCACTtctataaacccaaccaatagtttttttaaaagcaatgcagaaaaagaaaagccctcgtgaccacctgatttttaccatgttttcagatcttacctaattctcaccctgttatttacttgtttattttattctttggcttctgtttttgttttacctgctttctggaatcgttcttcaccagactcgaaccccattgtcacggtcaactcctctctgcatttcaagtccaccgacataAGCAGCGAGCCACTAGGAAAACTGATAACAgtagaaaagccgtccacacttGAGCCTCCACACTCCCTGGACCGGAAACACTGGATGTATATGTTCTTGGACTTTGCAAATATGGAACTGTCTCTGGCAAGGATGCATGGCGCTTCCATAAAAACTATTAACACATGGATATGTGCAATGACTAAGATAAAA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0098659 inorganic cation import across plasma membrane biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0140115 export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098739 import across plasma membrane biological_process
GO:0099587 inorganic ion import across plasma membrane biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005391 sodium molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022574 False 3916 lncRNA 0.36 2 15297233 15306717
TCONS_00024635 True 1703 lncRNA 0.43 3 15297233 15318217

Neighbor

gene id symbol gene type direction distance location
XLOC_011322 NA coding upstream 21088 15230045 ~ 15276145 (+)
XLOC_011321 gnpnat1 coding upstream 77293 15213496 ~ 15219940 (+)
XLOC_011320 NA coding upstream 111940 15185033 ~ 15185293 (+)
XLOC_011319 CU464134.1 coding upstream 127518 15157213 ~ 15169715 (+)
XLOC_011318 CU464134.2 coding upstream 131641 15111319 ~ 15165592 (+)
XLOC_011324 si:ch211-266g18.6 coding downstream 70262 15388479 ~ 15410985 (+)
XLOC_011325 cx40.8 coding downstream 95195 15413412 ~ 15417217 (+)
XLOC_011326 fabp7a coding downstream 115301 15433518 ~ 15435887 (+)
XLOC_011327 CU306817.2 coding downstream 198901 15517118 ~ 15517232 (+)
XLOC_011328 marcksb coding downstream 216598 15534815 ~ 15539701 (+)
XLOC_011316 NA non-coding upstream 266854 15029259 ~ 15030379 (+)
XLOC_011315 NA non-coding upstream 283757 15010637 ~ 15013476 (+)
XLOC_011330 NA non-coding downstream 277567 15595784 ~ 15596021 (+)
XLOC_011334 CR450701.1 non-coding downstream 583208 15901425 ~ 15901547 (+)
XLOC_011338 NA non-coding downstream 791954 16110171 ~ 16120963 (+)
XLOC_011341 BX927159.1 non-coding downstream 1219988 16538205 ~ 16538320 (+)

Expression


Co-expression Network