XLOC_011324 (si:ch211-266g18.6)


Basic Information

Item Value
gene id XLOC_011324
gene name si:ch211-266g18.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15388479 ~ 15410985 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022575
tgggTGGTTTGGGTTTCTAGGTCACTCCTGAAGGACGCAGGTAGGTAAACAGTAACTCTCCTCCTCAAACTGAATGTTGGTAGATGACGTCACCGCGCACCGTGTGAAAGTGAATGACTGACACCGCGTTAAAAGTGCtgaagctctctctctcttcctccagCAGTCGAAAACTGCTGTTCACCTCGGGGAGAGTCGAGTTTACCTGCGCTAAAACGGAATCACGACGACTGAGACTGCACTGTCAAGATTTCCGATTAAAGTAAAGCGCGGTGGTTCGCAGCTTACCTTGGGGAAACGTGCTCGTTTGTTTTTATTGAGCAGAATGAAACCGTCCAAAAGTGCCCTGGGACTGCTAGACTTGAGTTTTCTGTCTGCCGAGGAAGAGGCGGCCATCCGTCAGGTGCTGCTAAGAGATGAAGACTTAAAACGACTAGAGAGTGGACGAGTCAGGAAACTGAGGCAGTCTGTTCCTGACCTTCAACAGCTGAAGAATTTGACAGGCGAGTGGTTTGAGGAGCTCAGGATCAAGCGATACGGCCAGCAGACAGACGTCACAGCGGTGGTGAGGACCTCTATGAGATGGAAGAAAACAGCAGttCATAAACCCAACCCTTTCCTGAATGATAAACTGGACGAGAACAAAGAGCATGATAAGGATGAGCACAACACTCGTCCAAATGCATCAGCTGACCCTAGATTAATCCATCCAGCCCTGAGTAAAGAGACTTATCATCAACACACTCATAAGGACTTCATCGGTGATGTTGAGACTCCCTCTGCTCCAAGTGTGtctaacaaaaaagaaaaactacgAGCAGAAACTGATGCCAACCCTTTCCTCAATGGCACAGACCCAGGACACAAGTCTACAAAAACACAACCTAAAGAGCTCTCTGGTGGCCAAACAACAACTGTTTTCCCCTTCTCAAGTCCAGTTCAAGACACTAAACCAGAAAGAAGCACCACAAAAAATCCAGAGCCACGACGAAAAGTTTCCCTCCCTCCAGCACTACAGAGAGACCAATCATTTGAAGAGAACTGGGTGAAGATCTCCCTGGAACCAAACACTGTAAAGCCTGTACATGATGAAAACAATAGCTCTGGAATTAAACTAAAAGAGGTAAAAGATGCTTCCAGTGATTTTGGTGATGACGTCCAGGTCCAGATTGAAAAGAAGAATGAAAATGAGCTGCTTTATCAGACAACTGGTGTGAAATTATGTGACAAAACTGTACAAAGTGATCTTGATTCCTGTGAAGATAAAGTAAAATTAAGGTCATATAATAATCAGACATTATCAGAAATAAGCCAAGACATTTTTTCAATGACAGATGATGGGAAGTTAGTGCACATCAGAGAAGATAAACACATGGACAAATCTGTCCCTGAACCAATTAAACCAGCTCATCCCAGTGACGATGTTGCTGGATTTGGTCAAGATTCTTCAGAAATTAAAGTTGATGTGGACAGTGCTGAAACAAAGTCAGATGTTCTACTAAATGTTCTTGCAAGAGCTCAAAAAACAAGACCACCTGTCCTGCAGAACATCACCAATCAGGAGCCAAACCTGGAGGGTACAGATGATACGGTTCCCAGTATAGTCATTGTGCCATCTGAATCTCCAGATCCAGCAGAAATGAAAGGAAACAAACGTGGGGCATTAGTTCTGGAGGCTTTACTTCAGAGTTCCACTGCGAAAAATCCTTCATACATTGCAGATGCTTGGGAGGATGAAGGAGTCAATTCAGATGATGATGATACCTCACTGTCCAGTTATGGGTCAGATCTGTCTAGCAGAAAAGGCTTTTCAGCTAGCGCTCTGTCTCTTACTGATCGCACTGGGAGTTTGCTGAGTGTGTACAGTGACGCTGGGGATTTTGGGACTGTGGAGGTGCAGGGCTCTGTAGAGTTCGCAGTGATGTACAGCCCTGTTGGAGAGCTCATCATCATGATTGAACAGTGTCAGGATCTCGCTATTGCTAATCCTCGTAAGCAACGTACTGACCCTTATGTCAAGACATATCTCTACCCAGACAAGTCTCGCCGCAGCAAAAGGAAAACCACCATTAAAAAGCGGACTGTGAATCCTGTTTTTGTGGAATCTCTGAGGTACAAAGTGAACCGTGAAGAGCTGCCGGAAAAGTCTCTGAACCTCTCTGTGTGGCACAATGATTCCAGGGGCCGAAATGTGTTTCTGGGTCAGGTTGAGCTCAGTTTTAGGACCTGGGACTGGGGTCATGAAGCCCTTACCTGGTACAACCTACAGCCAAAGACATCGGAAAATGCAGAAACGAAAGAGTCTAATGGATTGCTGTCAGTTTCACTAAAATATGTTCCATCAGCATCCACTGGTGGGTCGAAGAGCAGCACCGGGGAGATTCATGTTTGGCTGCGTGAGGCAAAAGAATTGCGTCGCTTGAAGCCTCAGGGAGTCGATTCCTTTGTTAAATGCTACATTTTACCAGACACCAGAAAGAAAAGTCGCCAGAAGACTCGTGTTGTGAAAAAGACCCAGGACCCAGTGTATAACCATGCCATGGTGTACGACGGCTTCAAAACTGGAGAAGTCACTGAAGCCTGCTGTGAATTGACTGTTTGGGATCACAACACACTCGCCAATCAGTTTCTGGGAGGTGTGCGCCTCAGTCTCGGAACAGGGCAGAGCTATGGCAAGAAAGTGGACTGGATGGACTCGGTGGATGAGGAAGTTCAGATATGGAAAAGAATGTTGGCCAGCCCGAACAGCTGGGTTGAGGGAGAGCTTCCCCTGAGGTCCGCCATGACCCCGAGGAAATCAACCTCCTAAAGTTCATCCGTGGTCTTCAATGTTTAGTTgtgagagaaaaacacacacgGGTGGTTTCCCAGAACAAAccaaactcttttttttccattACCAAGCCAGTTTCTTCACTTCAATCCTTCAGTTTCaagagaaataaaacaaatgctgcaaAATACTGTACACATGTGATTATGTGAATGAGAATATGTAATACTTAATCAAATTATTTCATCTTAAAATttgatatatatttaataaaattggattattgtgatttgtttcaaataaaaaaatgacaacgTTTGCATTCCTAAA
>TCONS_00022576
TTCAAGTTGAGCTCAATTCTTTTGATTTCTTTAGGAAACAAACGTGGGGCATTAGTTCTGGAGGCTTTACTTCAGAGTTCCACTGCGAAAAATCCTTCATACATTGCAGATGCTTGGGAGGATGAAGGAGTCAATTCAGATGATGATGATACCTCACTGTCCAGTTATGGGTCAGATCTGTCTAGCAGAAAAGGCTTTTCAGCTAGCGCTCTGTCTCTTACTGATCGCACTGGGAGTTTGCTGAGTGTGTACAGTGACGCTGGGGATTTTGGGACTGTGGAGGTGCAGGGCTCTGTAGAGTTCGCAGTGATGTACAGCCCTGTTGGAGAGCTCATCATCATGATTGAACAGTGTCAGGATCTCGCTATTGCTAATCCTCGTAAGCAACGTACTGACCCTTATGTCAAGACATATCTCTACCCAGACAAGTCTCGCCGCAGCAAAAGGAAAACCACCATTAAAAAGCGGACTGTGAATCCTGTTTTTGTGGAATCTCTGAGGTACAAAGTGAACCGTGAAGAGCTGCCGGAAAAGTCTCTGAACCTCTCTGT

Function

symbol description
si:ch211-266g18.6 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL1 (synaptotagmin like 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-599 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL1 (synaptotagmin like 1).

Ensembl:

ensembl_id ENSDARG00000003381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022575 False 3103 mRNA 0.45 16 15388479 15410985
TCONS_00022576 True 551 lncRNA 0.46 5 15396728 15403238

Neighbor

gene id symbol gene type direction distance location
XLOC_011323 NA coding upstream 70262 15297233 ~ 15318217 (+)
XLOC_011322 NA coding upstream 112334 15230045 ~ 15276145 (+)
XLOC_011321 gnpnat1 coding upstream 168539 15213496 ~ 15219940 (+)
XLOC_011320 NA coding upstream 203186 15185033 ~ 15185293 (+)
XLOC_011319 CU464134.1 coding upstream 218764 15157213 ~ 15169715 (+)
XLOC_011325 cx40.8 coding downstream 2427 15413412 ~ 15417217 (+)
XLOC_011326 fabp7a coding downstream 22533 15433518 ~ 15435887 (+)
XLOC_011327 CU306817.2 coding downstream 106133 15517118 ~ 15517232 (+)
XLOC_011328 marcksb coding downstream 123830 15534815 ~ 15539701 (+)
XLOC_011329 bach2a coding downstream 148061 15559046 ~ 15744378 (+)
XLOC_011316 NA non-coding upstream 358100 15029259 ~ 15030379 (+)
XLOC_011330 NA non-coding downstream 184799 15595784 ~ 15596021 (+)
XLOC_011334 CR450701.1 non-coding downstream 490440 15901425 ~ 15901547 (+)
XLOC_011338 NA non-coding downstream 699186 16110171 ~ 16120963 (+)
XLOC_011341 BX927159.1 non-coding downstream 1127220 16538205 ~ 16538320 (+)

Expression


Co-expression Network