XLOC_011326 (fabp7a)


Basic Information

Item Value
gene id XLOC_011326
gene name fabp7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15433518 ~ 15435887 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022578
ACTGTGGAGACTGAACTCAGCGACTGTACGAGCAGGACCACTGTGTGTTTCATCATCTCTCAACATGGTCGATGCATTTTGTGCCACTTGGAAACTGGTTGACAGCCAGAACTTCGACGAGTACATGAAGTCACTGGGTGTTGGTTTTGCTACCAGGCAAGTAGGCAATGTTACCAAACCCACAATTGTGATCAGTCATGAGGGCGATAAAGTTGTGATAAAGACGCTGAGCACCTTTAAAAACACCGAAATTTCCTTCAAACTGGGAGAGGAGTTTGATGAAACCACAGCAGACGATAGACATGTGAAGTCTACTGTATCCTTGGAAGGAGACAATCTTGTCCAAGTTCAGAGGTGGGACGGCAAGGAGACAAAGTTTGTCAGAGAAATCAAGGATGGTAAAATGGTTATGACCTTGACCTTTGAGGGAGTGCAGGCCGTGCGCACATACGAGAAGGCATAATGTCCAGAGCGCAGGACGTTTCAGTATTACCCTGGCAACTTGACGATATTACAAGGGAATTTTTATTACACTGTATTGTCATCTGGGAGTTTTCCCCTTTTTTTGTAAGACCTTTTATATAAAACGCACATTGTGAGTTGTTTTAAATGATGCAGAATGTCAATGATGGTGGTGGGGGAGTGTATTATTGAGGCCTGCCTTTGTGTCAAATTGAAAGAAATACACatttgatctaaaaaaaaaaaaa
>TCONS_00022579
GACTGAACTCAGCGACTGTACGAGCAGGACCACTGTGTGTTTCATCATCTCTCAACATGGTCGATGCATTTTGTGCCACTTGGAAACTGGTTGACAGCCAGAACTTCGACGAGTACATGAAGTCACTGGGTGTTGGTTTTGCTACCAGGCAAGTAGGCAATGTTACCAAACCCACAATTGTGATCAGTCATGAGGGCGATAAAGTTGTGATAAAGACGCTGAGCACCTTTAAAAACACCGAAATTTCCTTCAAACTGGGAGAGGAGTTTGATGAAACCACAGCAGACGATAGACATGTGAAGTCTACTGTATCCTTGGAAGGAGACAATCTTGTCCAAGTTCAGAGGTGGGACGGCAAGGAGACAAAGTTTGTCAGAGAAATCAAGGATGGTAAAATGGTTATGtccctttattaatccggggtcaccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaacaatTCATCATATATTCATACCTTGACCTTTGAGGGAGTGCAGGCCGTGCGCACATAC
>TCONS_00022580
ACATTTACTTGAATATCTTTGCATGTGTGTTGGTTTTGCTACCAGGCAAGTAGGCAATGTTACCAAACCCACAATTGTGATCAGTCATGAGGGCGATAAAGTTGTGATAAAGACGCTGAGCACCTTTAAAAACACCGAAATTTCCTTCAAACTGGGAGAGGAGTTTGATGAAACCACAGCAGACGATAGACATGTGAAGTCTACTGTATCCTTGGAAGGAGACAATCTTGTCCAAGTTCAGAGGTGGGACGGCAAGGAGACAAAGTTTGTCAGAGAAATCAAGGATGGTAAAATGGTTATGACCTTGACCTTTGAGGGAGTGCAGGCCGTGCGCACATACGAGAAGGCATAATGTCCAGAGCGCAGGACGTTTCAGTATTACCCTGGCAACTTGACGATATTACAAGGGAATTTTTATTACACTGTATTGTCATCTGGGAGTTTTCCCCTTTTTTTGTAAGACCTTTTATATAAAACGCACATTGTGAGTTGTTTTAAATGATGCAGAATGTCAATGATGGTGGTGGGGGAGTGTATTATTGAGGCCTGCCTTTGTGTCAAATTGAAAGAAATACACatttgat

Function

symbol description
fabp7a Predicted to enable fatty acid binding activity. Is expressed in several structures, including gill; immature eye; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FABP7 (fatty acid binding protein 7).

GO:

id name namespace
GO:0005504 fatty acid binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000627-1 Predicted to enable fatty acid binding activity. Is expressed in several structures, including gill; immature eye; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FABP7 (fatty acid binding protein 7).

Ensembl:

ensembl_id ENSDARG00000007697

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022578 False 710 mRNA 0.43 4 15433518 15435887
TCONS_00022579 False 565 nonsense_mediated_decay 0.47 5 15433526 15435628
TCONS_00022580 True 584 mRNA 0.41 4 15433671 15435872

Neighbor

gene id symbol gene type direction distance location
XLOC_011325 cx40.8 coding upstream 16301 15413412 ~ 15417217 (+)
XLOC_011324 si:ch211-266g18.6 coding upstream 22533 15388479 ~ 15410985 (+)
XLOC_011323 NA coding upstream 115301 15297233 ~ 15318217 (+)
XLOC_011322 NA coding upstream 157373 15230045 ~ 15276145 (+)
XLOC_011321 gnpnat1 coding upstream 213578 15213496 ~ 15219940 (+)
XLOC_011327 CU306817.2 coding downstream 81231 15517118 ~ 15517232 (+)
XLOC_011328 marcksb coding downstream 98928 15534815 ~ 15539701 (+)
XLOC_011329 bach2a coding downstream 123159 15559046 ~ 15744378 (+)
XLOC_011330 NA coding downstream 159897 15595784 ~ 15596021 (+)
XLOC_011331 rragd coding downstream 352213 15788100 ~ 15820304 (+)
XLOC_011320 NA non-coding upstream 248225 15185033 ~ 15185293 (+)
XLOC_011319 CU464134.1 non-coding upstream 263803 15157213 ~ 15169715 (+)
XLOC_011316 NA non-coding upstream 403139 15029259 ~ 15030379 (+)
XLOC_011334 CR450701.1 non-coding downstream 465538 15901425 ~ 15901547 (+)
XLOC_011338 NA non-coding downstream 674284 16110171 ~ 16120963 (+)
XLOC_011341 BX927159.1 non-coding downstream 1102318 16538205 ~ 16538320 (+)

Expression


Co-expression Network