XLOC_011336 (si:ch73-204p21.2)


Basic Information

Item Value
gene id XLOC_011336
gene name si:ch73-204p21.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 16046132 ~ 16084578 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022595
GGGGCTGTTGACACACCTCAGAGTAAATATAGCtgttaataaacataaaacactCCTGGCTGAGCAAAGGGTATTATAATTTACgtactttgttttgtttaaaccATTGTACGGTGAGATTGTGACATTTTCATGTCTCGGTTAACGTAGTGGATTTACTGACCGTCAAACAGAATCTGGACAGGTGAACTAATTAACGTCAGCCCAAATTTAGCTTTCGCTCTGTTGTCTTCAAACTGCGATACCATCGTGTCATCTGATGCGGTTTTGCTCGGATGATCCCACCAAATGTTGTTTAAACTCCCTTTAATCCAACAAAATCTGaAAGACGAACTCGCTGAAGCTGCTCGGTCTTGGCATCACATGACAGGCCAGAAAGACTGCGGAAGGATCTGCGCTCCTTGAAGGCCACTGTTGGAAGCATATCTTCCTCGTCCCTCAGCTCCAGCTTTGGCGTTTTTCCTGGACCTGCTAGCCTGATTACAGGGTTCACGTTCTCACAAGGCAATGTCGCACGTCTTCAGCTGTCCTTTCTCTGAGATCGCCTTGAAACCCATCTCAACCGTCCTGCCTGTCTTCCTCCACTCGCGTTCCTGCTCTGCCAGGCTCAAATGAGCTGGCATCTTGCTGTTTCAACACTGCTGGAATAggctgctgagagagagagagagagagcaattcTTCCTGAGGGAGATTGCGAGCAGCTGATTTGCTCCAGTCTGGGCTGCGTCCAGCACACGTGCGTGGCAAGCAGACTCAGCGAGCATCTGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacgGTTCAAGTCTACAAGTCAATGGTGGTGTTGGGGCAATGACTGGGAGTTCATAACACTTCAAGTCCTCTGCAAATGCCCTGAAGTCCTGTTTGACTGTCATAAAACTTCCCATCAAACTTTATTGGATCTGTTGGAGTC
>TCONS_00022596
AGGTGAACTAATTAACGTCAGCCCAAATTTAGCTTTCGCTCTGTTGTCTTCAAACTGCGATACCATCGTGTCATCTGATGCGGTTTTGCTCGGATGATCCCACCAAATGTTGTTTAAACTCCCTTTAATCCAACAAAATCTGaAAGACGAACTCGCTGAAGCTGCTCGGTCTTGGCATCACATGACAGGCCAGAAAGACTGCGGAAGGATCTGCGCTCCTTGAAGGCCACTGTTGGAAGCATATCTTCCTCGTCCCTCAGCTCCAGCTTTGGCGTTTTTCCTGGACCTGCTAGCCTGATTACAGGGTTCACGTTCTCACAAGCAGTGTCGCACGTCTTCAGCTGTCCTTTCTCTGAGATCGCCTTGAAACCCATCTCAACCGTCCTGCCTGTCTTCCTCCACTCGCGTTCCTGCTCTGCCAGGCTCAAATGAGCTGGCATCTTGCTGTTTCAACACTGCTGGAATAggctgctgagagagagagagagagagcaattcTTCCTGAGGGAGATTGCGAGCAGCTGATTTGCTCCAGTCTGGGCTGCGTCCAGCACACGTGCGTGGCAAGCAGACTCAGCGAGCATCTGGTAAGAGAGCAGGACTTCATCTGAACTTTAGAGTTCACTAACAGGAGGAGGTCACTCAGTTATTATCCAGTACAGGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTGACGAAATGGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacgGTTCAAGTCTACAAGTCAATGGTGGTGTTGGGGCAATGACTGGGAGTTCATAACACTTCAAGTCCTCTGCAAATGCCCTGAAGTCCTGTTTGACTGTCATAAAACTTCCCATCAAACTTTATTGGATCTGTTGGAGTCCCCTGATCTGTCCCTCTGCACTGACCGGACTCATTCATTGCTGAATCTCTATGCAGCGGTTCAGACTGTTTCAGACTAGTGTCCTTCAAGAGACGGATCCTGATATTCTGGACACACCTGTTGTGACAAATAAGGAGCGCTGTTTGGGTGGTCGTCGGTTAAATGTGACACAAGCAGGAAAATCTAGTGTTGCATCTTCACTTGAATATGAAGACCAAGTGTTGATAATGTCAACACTTAAAggctatttttttctaatgaagtTCAGTATTGTGAAATGATTCTGTATTCACATTCTTTCTTAGTCGGGGTGATGTATAGACTTTATCTTCTGATCAGCTGGTCTATGTGTAACTTTATGAATTTAGATGGCATCGTAATGGTGAATAATTTTAGTTTTGAAATGTATGAATTCCTATGAAAATATTTGATTAGAACTATTAACATGTAATAAAATTAGCAGACTCTTTAGAATGAACCCTTCTGTTCTGGTGACTGTCTGTATTTAGgggaatgttttttttgtttgttttgtgaggGTACTTATGGGTCAATGATGAGTTTTATTTAAAAGCTTAAACTCTTTAATAATCTTCAAATTTATATCAGAAACAATgctttatcaaaaaataaatgaaccatCAAATCAAATTGTAAACAGAATCAAAAAAACTTACAAtgagattttttatatataaaaaaatgtttttaaaatcattaaaaattttGTAGAg
>TCONS_00022597
CTGTTGTCTTCAAACTGCGATACCATCGTGTCATCTGATGCGGTTTTGCTCGGATGATCCCACCAAATGTTGTTTAAACTCCCTTTAATCCAACAAAATCTGaAAGACGAACTCGCTGAAGCTGCTCGGTCTTGGCATCACATGACAGGCCAGAAAGACTGCGGAAGGATCTGCGCTCCTTGAAGGCCACTGTTGGAAGCATATCTTCCTCGTCCCTCAGCTCCAGCTTTGGCGTTTTTCCTGGACCTGCTAGCCTGATTACAGGGTTCACGTTCTCACAAGGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTGACGAAATGGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacgGTTCAAGTCTACAAGTCAATGGTGGTGTTGGGGCAATGACTGGGAGTTCATAACACTTCAAGTCCTCTGCAAATGCCCTGAAGTCCTGTTTGACTGTCATAAAACTTCCCATCAAACTTTATTGGATCTGTTGGAGTCCCCTGATCTGTCCCTCTGCACTGACCGGACTCATTCATTGCTGAATCTCTATGCAGCGGTTCAGACTG
>TCONS_00022598
TTTTGCTCGGATGATCCCACCAAATGTTGTTTAAACTCCCTTTAATCCAACAAAATCTGaAAGACGAACTCGCTGAAGCTGCTCGGTCTTGGCATCACATGACAGGCCAGAAAGACTGCGGAAGGATCTGCGCTCCTTGAAGGCCACTGTTGGAAGCATATCTTCCTCGTCCCTCAGCTCCAGCTTTGGCGTTTTTCCTGGACCTGCTAGCCTGATTACAGGGTTCACGTTCTCACAAGGCAATGTCGCACGTCTTCAGCTGTCCTTTCTCTGAGATCGCCTTGAAACCCATCTCAACCGTCCTGCCTGTCTTCCTCCACTCGCGTTCCTGCTCTGCCAGGCTCAAATGAGCTGGCATCTTGCTGTTTCAACACTGCTGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTGACGAAATGGGT
>TCONS_00022599
TCAGTCTGTCTGATGGAAAGCCGAGTGCAGGAATGAGGAAATGGGCTTGTCGAAGCTCTTTTTCACCTTCCTGTCCGAAAGCTACAGTCAGTGTAATTTTGACAGGAGCGCCTGACGTCTGTCTGTTTTCTGCACCGATATGTAGGGTAAGAGAGCAGGACTTCATCTGAACTTTAGAGTTCACTAACAGGAGGAGGTCACTCAGTTATTATCCAGTACAGGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTGACGAAATGGGTAAACTTGACTTGTCTATGACACTGAATTTCTTTTGAGTCTGAAGAGCTGTTTATCTCTTTACAATTAATTCTACTCAGCAAATGCACTTTAATCTTGCCTTTAAAGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacggtaaaaaaaaatgatagtaaataaaatgaataaaggaacaattcacctaaaaatgaaacttaccctcaagtggtttcaaacattttctgttgaacacacaagaagatgttttgaagaatgttagaaaa
>TCONS_00022600
AGTGTAATTTTGACAGGAGCGCCTGACGTCTGTCTGTTTTCTGCACCGATATGTAGGGTAAGAGAGCAGGACTTCATCTGAACTTTAGAGTTCACTAACAGGAGGAGGTCACTCAGTTATTATCCAGTACAGGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacgGTTCAAGTCTACAAGTCAATGGTGGTGTTGGGGCAATGACTGGGAGTTCATAACACTTCAAGTCCTCTGCAAATGCGTAAGCAATTCAGATTACTAAAGTTAAAGAGTTCcctagag
>TCONS_00024641
AGGTGGCACAGTCATGGCACCCATCAGCACAGATCTAGTGGGCTTGGCGTTCACAGAACAACCAACGGCTGCATTTCTCTCCATAGTCATCCTCTTTATCGCCAGCATTGTACTCCTTGTTCTCTGTGCGAGCTGTAAAAAACATTCCTTTGAATTGGAGAAGAGCAGCGCACCTGTTCAGCAGAAACCACCATCCACACTAGTGAGCGTGGCCAGAATGAATGATTCAGCAGCCAGACACAACCCTACCGCTAATGAAATCACAGGTGACGAAATGGGTTATGAGGTTGAAGACGAGGGTAACGTAGAGGTCTCTCAAGGAGGAATCGTGTACAAACCCTGGAGAAGTCACACCCTCACTCacgGTTCAAGTCTACAAGTCAATGGTGGTGTTGGGGCAATGACTGGGAGTTCATAACACTTCAAGTCCTCTGCAAATGCCCTGAAGTCCTGTTTGACTGTCATAAAACTTCCCATCAAACTTTATTGGATCTGTTGGAGTCCCCTGATCTGTCCCTCTGCACTGACCGGACTCATTCATTGCTGAATCTCTATGCAGCGGTTCAGACTGTTTCAGACTAGTGTCCTTCAAGAGACGGATCCTGATATTCTGGACACACCTGTTGTGACAAATAAGGAGCGCTGTTTGGGTGGTCGTCGGTTAAATGTGACACAAGCAGGAAAATCTAGTGTTGCATCTTCACTTGAATATGAAGACCAAGTGTTGATAATGTCAACACTTAAAggctatttttttctaatgaagtTCAGTATTGTGAAATGATTCTGTATTCACATTCTTTCTTAGTCGGGGTGATGTATAGACTTTATCTTCTGATCAGCTGGTCTATGTGTAACTTTATGAATTTAGATGGCATCGTAATGGTGAATAATTTTAGTTTTGAAATGTATGAATTCCTATGAAAATATTTGATTAGAACTATTAACATGTAATAAAATTAGCAGACTCTTTAGAATGAACCCTTCTGTTCTGGTGACTGTCTGTATTTAGgggaatgttttttttgtttgttttgtgaggGTACTTATGGGTCAATGATGAGTTTTATTTAAAAGCTTAAACTCTTTAATAATCTTCAAATTTATATCAGAAACAATgctttatcaaaaaataaatgaaccatCAAATCAAATTGTAAACAGAATCAAAAAAACTTACAAtgagattttttatatataaaaaaatgtttttaaaatcattaaaaattttGTAGAg

Function

symbol description
si:ch73-204p21.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-49 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022595 False 1258 mRNA 0.48 11 16046132 16083844
TCONS_00022596 False 1897 mRNA 0.43 12 16046314 16084578
TCONS_00022597 False 851 mRNA 0.49 9 16046354 16083912
TCONS_00022598 False 656 mRNA 0.50 7 16046397 16081761
TCONS_00022599 False 820 lncRNA 0.43 4 16075620 16082082
TCONS_00022600 False 600 lncRNA 0.47 6 16075709 16082371
TCONS_00024641 True 1237 lncRNA 0.39 6 16078524 16084578

Neighbor

gene id symbol gene type direction distance location
XLOC_011335 clmn coding upstream 11679 15983247 ~ 16034453 (+)
XLOC_011333 syne3 coding upstream 79386 15899039 ~ 15966746 (+)
XLOC_011334 CR450701.1 coding upstream 144585 15901425 ~ 15901547 (+)
XLOC_011332 gabrr2a coding upstream 153509 15845765 ~ 15892623 (+)
XLOC_011331 rragd coding upstream 225828 15788100 ~ 15820304 (+)
XLOC_011337 znf395a coding downstream 5582 16090160 ~ 16108384 (+)
XLOC_011338 NA coding downstream 25593 16110171 ~ 16120963 (+)
XLOC_011339 kif13ba coding downstream 107908 16192486 ~ 16283814 (+)
XLOC_011340 efcab11 coding downstream 339143 16423721 ~ 16533069 (+)
XLOC_011341 BX927159.1 coding downstream 453627 16538205 ~ 16538320 (+)
XLOC_011330 NA non-coding upstream 450111 15595784 ~ 15596021 (+)
XLOC_011327 CU306817.2 non-coding upstream 528900 15517118 ~ 15517232 (+)
XLOC_011323 NA non-coding upstream 727915 15297233 ~ 15318217 (+)
XLOC_011322 NA non-coding upstream 769987 15230045 ~ 15276145 (+)
XLOC_011345 NA non-coding downstream 979644 17064222 ~ 17065104 (+)
XLOC_011346 NA non-coding downstream 1611257 17695835 ~ 17701349 (+)
XLOC_011350 NA non-coding downstream 1829762 17914340 ~ 18025691 (+)

Expression


Co-expression Network