XLOC_011337 (znf395a)


Basic Information

Item Value
gene id XLOC_011337
gene name znf395a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 16090160 ~ 16108384 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022601
ACCTGGCACTGGATTCCTGCATAGCAGCTCATCCTGGTGAAGattaaacaaatatgaatattaaaacgACATTAAACCGAAGTTCTGCTTGCTATGTGAACGCTGTGGATTATTATAGACGTATTTAAGTTTAGCGTTATTATTGTCGTTGtgcttttttaaacattgtttacaCGTTACTGTACAAAATCCAGGCCGGGATTTCGAATAGCTGAACACAAGCCGTTCTGGGCTCTGAAAAAGGGCATTTTCAAGTTACAGCCGGTCAGAGCGAGCCTTGTGGAAAGGGGGTGTGTTGAAAATTGGCAAAGCTTCCGGTTTGCTGTTTGAAAAGTGCTGCTGAATCTCCATCTGGAGTTCTTTTAAAGCAGTCCAGAAGAAAGAAGGTACATGGAACAGAAAATGGTACCGAAGACCAGACTTGGGAAGCGGTCACCGCTGGGCACCCTGGTGTGTGGTTCCTCAGCGGAGGGCCTGACAGAAACAGGAGCACATGGATGCCAAGATGGTGGGCTTCACAGAAGCAAACTTTACCCTGGACAGAAGGTGTACGGCATTGAGCACCGAGACCAGTGGTGCACCGCCTGCCGCTGGAAAAAGGCCTGTCAGAGATTC
>TCONS_00022602
CTTGTGGAAAGGGGGTGTGTTGAAAATTGGCAAAGCTTCCGGTTTGCTGTTTGAAAAGTGCTGCTGAATCTCCATCTGGAGTTCTTTTAAAGCAGTCCAGAAGAAAGAAGGTACATGGAACAGAAAATGGTACCGAAGACCAGACTTGGGAAGCGGTCACCGCTGGGCACCCTGGTGTGTGGTTCCTCAGCGGAGGGCCTGACAGAAACAGGAGCACATGGATGCCAAGATGGTGGGCTTCACAGAAGCAAACTTTACCCTGGACAGAAGGTGTATGTGCACTGCGGAGGCCAGGAATGTGGAGGTGTGGTGGAACAGCATAACCACGTGGACAACGAGGTGTCGATCTTCCTTCCCCAGCTCAACCAGCACGTTCACCGCAAGCTGGAAGACGTGTGGACAAGCCCAACGTCCAGTTCTACCTCTTCAGTCTCTTCGTCCATCGACGTGCCAAGAAGGAGTGTGGAGGCAGTGGACATGGATGAGATTATGGCTGCAATGGTGCTCACAAGTCTTTCTTGCAGTCCAGTCGTCCAGCACTCAACCCAGGGCAGCGTAACTCCTGCTTTATGTGGGATGGAAAATGGTGGTAGCGAACTGTCTGATGGAGGCTATTGGAGTTGCGACCATGGAAACGGAAGCCCTGCCCCTTCTCCGCCCATTGAGGAGACTGACAAGAGCAACCCTCATGCTGATGAAGGCCTGGACATGGAAATGGACCAAATGTTGTTCAATGAGCCAACACCAAGAAAACGCAAGAACTCTGTCAAAGTAGCATATTGGTGTTTATGGCCAAATTGTGGAAAAGTCCTGACCACAGTAGTGGGCATCAAACGTCACATCCGAAATTCTCATCTTGGACAAAGTGACGAGCACTCCCAAAGGGAAGAAGACTTCTACTACACTGAAGTCTATCAGGATTTCGAGCAGACGGCTCCCCCTGGCGGCCACCGGGCGTCCTGCACTTCTCCATCCCCCATCCCGAGCCAACACACACCCCCTTCTCCCTCCACCCCGGACACACTCCAGCCCAGCCCGCTCAGCCAGTCTGCCCCGGGCAGCTTCTGGCAGGTCCATTCAGAGCACTCTTACCAGGCTCCTGCACCCGTTCAGGTGGTGACCCAGTCTAAACCAGTGCCTGTTCCTGTGTCCTGTCACTGGACTCCATCTCTCACTGTCCACCAGAGCAAGCAGGGATCACCGTTCCGCCGTCGGTCAGTCAGTGTTGGTGAACAGTGGCTCCAGAATAACAGCGCCTCCTTCAGGCCGCATCCTGCCAGTGTTTCCCCTCCAAGAAACCATTGCACTTCCAGGAGGATTCGAGGTGAGGCCAAGAAATGCAGGAAGGTGTACGGCATTGAGCACCGAGACCAGTGGTGCACCGCCTGCCGCTGGAAAAAGGCCTGTCAGAGATTCCTCGACTAAAGCCTTCAAGAAATACAGACACTATCCTTACAGAAACCCACAGGAGGGGATCTGACCTGGAACTACGGTTGGAACAaaccaaaagagcacctttgtgacttaactttttctacattttatcaCGATTACCTGTGCTGTGTTTTATGAGACGTACTAAGGAACCATGATGGTGCTGGAAGAGTGATAAAGCAGATCTCGCAGTCTTCCTGCATCTTATATCAAGACCTGATGAAGTTTTAtccatttttgttgttttgcaaGCATTAAACAGCCATAATACAACGGCAGATGTCAGATTGTTTTGGGTGTAAATCATCAGACACGGATGGAAAGTTTACTTCTCATTCCAGCTTATAAGAGATTACTGCGGTCCATTGCTTTCAGGGGCAAAATCGGCAGCTTTGGGTTAGTTGTAGATAGACAAGAAAGCAGAATCAGTGTCTCAATAGTATATAAAACACCGTTTATGTTCATGTATACCATGTTtaccttttgtttttttcttcttctttgctTTCCAGTGCAAAATTTTGTATAGCAAACTCttgaaaaggaagaaaaaaaggatTTTGTATTACGATTTTAATGTGTCATGTCATCATGGGTGTATTTCTATCACAGGTTATACTTCTGTGGATATGAGATGATTCTTTTTTCTGTCGATATTATGGAAGTATCCGTGTAAACATGCATGAGTTGATAGTTTATTCCTCTACTTAGTTTTACTCACTGGCTGTTCGTCCGTTTGGATTGCAATCTTGCCAAAGAGAATCCATCTCCAcaaaataatgtgaaattaaCCTGCTGACCATTCTTGGGATAAATGTAACCAGCTGTTACGATCGGTTCATGTACTCTGGGTCCAAATATTTTCTTATGTCGTAAAACACTTCTATTCGTCAACGTTTCGTGTGCATCTCCACTGTGTAGTCTCTCACCAAGCTCGATGCTTTGACCTCATGAAACTGAATGTAATTTACCCTGAAGATCTCCATAAGTCGTTGTGCATTTCCAACAGTCGGTGTCATATAGGTGTTTGAGGACGTTGTAGTCTGAGAGATATTCAGTAAACCTCATTAAGAACAatctttttgtacatttttgtaaagtACTTCCAAAGTGTTTCCTTTAATGAACCGTCTGAGATCTGTTCAAGATGAAAGTATAATTTCTTTTCATGAAACTTATGTTGCTTCATgcctttttaaataaacttttgtgcGAACGAGTA
>TCONS_00022603
AGTTTTTCCTctgattttaaatgcatttgtgttttAACGTGTCGTTGTGTGCTCCTCTAATAAGACTGTGTTGTTTGGTGTCATTAAGCTTCCGGTTTGCTGTTTGAAAAGTGCTGCTGAATCTCCATCTGGAGTTCTTTTAAAGCAGTCCAGAAGAAAGAAGGTACATGGAACAGAAAATGGTACCGAAGACCAGACTTGGGAAGCGGTCACCGCTGGGCACCCTGGTGTGTGGTTCCTCAGCGGAGGGCCTGACAGAAACAGGAGCACATGGATGCCAAGATGGTGGGCTTCACAGAAGCAAACTTTACCCTGGACAGAAGGTGTATGTGCACTGCGGAGGCCAGGAATGTGGAGGTGTGGTGGAACAGCATAACCACGTGGACAACGAGGTGTCGATCTTCCTTCCCCAGCTCAACCAGCACGTTCACCGCAAGCTGGAAGACGTGTGGACAAGCCCAACGTCCAGTTCTACCTCTTCAGTCTCTTCGTCCATCGACGTGCCAAGAAGGAGTGTGGAGGCAGTGGACATGGATGAGATTATGGCTGCAATGGTGCTCACAAGTCTTTCTTGCAGTCCAGTCGTCCAGCACTCAACCCAGGGCAGCGTAACTCCTGCTTTATGTGGGATGGAAAATGGTGGTAGCGAACTGTCTGATGGAGGCTATTG
>TCONS_00022604
TTGTGTGCTCCTCTAATAAGACTGTGTTGTTTGGTGTCATTAAGCTTCCGGTTTGCTGTTTGAAAAGTGCTGCTGAATCTCCATCTGGAGTTCTTTTAAAGCAGTCCAGAAGAAAGAAGGTACATGGAACAGAAAATGGTACCGAAGACCAGACTTGGGAAGCGGTCACCGCTGGGCACCCTGGTGTGTGGTTCCTCAGCGGAGGGCCTGACAGAAACAGGAGCACATGGATGCCAAGATGGTGGGCTTCACAGAAGCAAACTTTACCCTGGACAGAAGGTGTATGTGCACTGCGGAGGCCAGGAATGTGGAGGCAGTGGACATGGATGAGATTATGGCTGCAATGGTGCTCACAAGTCTTTCTTGCAGTCCAGTCGTCCAGCACTCAACCCAGGGCAGCGTAACTCCTGCTTTATGTGGGATGGAAAATGGTGGTAGCGAACTGTCTGATGGAGGCTATTGGAGTTGCGACCATGGAAACGGAAGCCCTGCCCCTTCTCCGCCCATTGAGGAGACTGACAAGAGCAACCCTCATGCTGATGAAG

Function

symbol description
znf395a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF395 (zinc finger protein 395).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-52 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF395 (zinc finger protein 395).

Ensembl:

ensembl_id ENSDARG00000060113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022601 False 615 processed_transcript 0.47 3 16090160 16107144
TCONS_00022602 False 2656 mRNA 0.46 10 16090436 16108384
TCONS_00022603 False 670 mRNA 0.50 5 16090494 16099648
TCONS_00022604 True 545 nonsense_mediated_decay 0.51 5 16090538 16099731

Neighbor

gene id symbol gene type direction distance location
XLOC_011336 si:ch73-204p21.2 coding upstream 5582 16046132 ~ 16084578 (+)
XLOC_011335 clmn coding upstream 55707 15983247 ~ 16034453 (+)
XLOC_011333 syne3 coding upstream 123414 15899039 ~ 15966746 (+)
XLOC_011334 CR450701.1 coding upstream 188613 15901425 ~ 15901547 (+)
XLOC_011332 gabrr2a coding upstream 197537 15845765 ~ 15892623 (+)
XLOC_011338 NA coding downstream 1787 16110171 ~ 16120963 (+)
XLOC_011339 kif13ba coding downstream 84102 16192486 ~ 16283814 (+)
XLOC_011340 efcab11 coding downstream 315337 16423721 ~ 16533069 (+)
XLOC_011341 BX927159.1 coding downstream 429821 16538205 ~ 16538320 (+)
XLOC_011342 foxn3 coding downstream 456537 16564921 ~ 16734329 (+)
XLOC_011330 NA non-coding upstream 494139 15595784 ~ 15596021 (+)
XLOC_011327 CU306817.2 non-coding upstream 572928 15517118 ~ 15517232 (+)
XLOC_011323 NA non-coding upstream 771943 15297233 ~ 15318217 (+)
XLOC_011322 NA non-coding upstream 814015 15230045 ~ 15276145 (+)
XLOC_011345 NA non-coding downstream 955838 17064222 ~ 17065104 (+)
XLOC_011346 NA non-coding downstream 1587451 17695835 ~ 17701349 (+)
XLOC_011350 NA non-coding downstream 1805956 17914340 ~ 18025691 (+)

Expression


Co-expression Network