XLOC_011340 (efcab11)


Basic Information

Item Value
gene id XLOC_011340
gene name efcab11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 16423721 ~ 16533069 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022607
AAACCAATCCCTCCCATCCATACTGTTTCTATGCGAACATCTACAACTTTCCAGAAGCCTTCACGTATTGATATCTAGTTAGTTCAAATATACAAATGTTAACAACAGGAAGAAGCTTTAGGAATGAGAGACAAATAAACGATGCCGAGAGGAAAAAAATTGAGTTGGTTTTTCATCAGTGCGACGTGGATAAGAAAGGATATTTGTCCAGAGAAGATCTTAAGATAGCAGTTGTCATGCTGTTTGGATACAAGCCATCAAAGTCTGAGACAAACATCTTGATGGAGAACGGCACTATTAAGGACTGTAAAGGGGTCCCACTGGAGCCGTTTGCTACTCTCATGAGGAGGAAGATGTCAGCAGAAGATCCATATGAGAAGGCGAGGCAGATCTTCAGTGCATTTGATGTACACTGTCGTGGCTTCTTGAAGCTGGATGACTTCAAAAGTGCCTTCAAGCGAGTTGCCCCTCGTCTGCAGGAGAGAACAGTGCTGGAGGCTTTCCGGCATGCGGATCAAGATTCTGACGGTCACATCAGCTTCAAGGATTTTGAAAACATCATCAGCTATGGTTTGGCGAACACCTGCACCTCTACATGAGCCACAAATATATTCATTTTGGACCATTTATTTAGTTGATGAAGAAAAGTGAAGCAACGTGTATTTGCTACTTCtcttttgttttgtcattttaaaccaTGACAGTCTGCCATTCACACTCTCGCTCCAATAGATAACTCTCAGCAATTTCGAGGACACAGTTTGGCCTTGCCTGTTGAAAGGCGGAGTAACTTAAGATGCTTGACACTTGGGTTAGATGATAACTTTTGATGTTGTATTGATCCATTTGGACCGAGACTGAACGGTGTAATAGAGAAGCACACATTTCTATTGTGCAGTTGCCTTACAAACTACATTAAATTTAACCCAGCCTCTCAGGGTTTACTTCACTAGATGCTGGAACAATATTCCCTTTCCAGCCTTCGGTACTCGCTCTCTTAAAATGacttctgtaatttttttttttttctttttccgtcAGTCAATTTTATAGCATCTTAAAAACTAGAAATAAATCATCCTCCCTTGTTCAGTTTTCATCTACAAAATAGGCAGGTTGCTTCAAAATTGAATATTTACTAGCGCATTCAGATTCAGTTGAAACTCTCTTCTAGCAACATGTAATAAACAGCCTGAACGCGCTCGTTCGGGGAGGATTTTATGCGACTGGTCTTGTTCCATGTGATTATGGTACTGTAaatacttgtttgtgtttcaagaGATTTGCTGCACTCCCATCTGAATAaagattaatttgtttttgtaatca
>TCONS_00022608
CGGGTTGAGTCACCCAAGGAGACGGTGTGGCAAGATTGTGTGTGCGAGATTGTTTGTGCCAGATTGTTTGCGCCTAAACCgcgtgtggttctgcgggcctgcagctggacgTTATTGCACCCGAGTGCACGAGAAGTACAGTAGGTGGTGGTAGTACTACCAAGGAGTGAGCAACCAATTAATGAAGAAGAAGAATGCTCCGGATGGAATTTGTCCCAATTTTTCATCAAAAGTCTGAGACAAACATCTTGATGGAGAACGGCACTATTAAGGACTGTAAAGGGGTCCCACTGGAGCCGTTTGCTACTCTCATGAGGAGGAAGATGTCAGCAGAAGATCCATATGAGAAGGCGAGGCAGATCTTCAGTGCATTTGATGTACACTGTCGTGGCTTCTTGAAGCTGGATGACTTCAAAAGTGCCTTCAAGCGAGTTGCCCCTCGTCTGCAGGAGAGAACAGTGCTGGAGGCTTTCCGGCATGCGGATCAAGATTCTGACGGTCACATCAGCTTCAAGGATTTTGAAAACATCATCAGCTATGGTTTGGCGAACACCTGCACCTCTACATGAGCCACAAATATATTCATTTTGGACCATTTATTTAGTTGATGAAGAAAAGTGAAGCAACGTGTATTTGCTACTTCtcttttgttttgtcattttaaaccaTGACAGTCTGCCATTCACACTCTCGCTCCAATAGATAACTCTCAGCAATTTCGAGGACACAGTTTGGCCTTGCCTGTTGAAAGGCGGAGTAACTTAAGATGCTTGACACTTGGGTTAGATGATAACTTTTGATGTTGTATTGATCCATTTGGACCGAGACTGAACGGTGTAATAGAGAAGCACACATTTCTATTGTGCAGTTGCCTTACAAACTACATTAAATTTAACCCAGCCTCTCAGGGTTTACTTCACTAGATGCTGGAACAATATTCCCTTTCCAGCCTTCGGTACTCGCTCTCT

Function

symbol description
efcab11 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB11 (EF-hand calcium binding domain 11).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-348 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB11 (EF-hand calcium binding domain 11).

Ensembl:

ensembl_id ENSDARG00000043740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022607 False 1329 mRNA 0.40 6 16423721 16533069
TCONS_00022608 True 968 mRNA 0.45 5 16429826 16532738

Neighbor

gene id symbol gene type direction distance location
XLOC_011339 kif13ba coding upstream 139907 16192486 ~ 16283814 (+)
XLOC_011338 NA coding upstream 302758 16110171 ~ 16120963 (+)
XLOC_011337 znf395a coding upstream 315337 16090160 ~ 16108384 (+)
XLOC_011336 si:ch73-204p21.2 coding upstream 339143 16046132 ~ 16084578 (+)
XLOC_011335 clmn coding upstream 389268 15983247 ~ 16034453 (+)
XLOC_011341 BX927159.1 coding downstream 5136 16538205 ~ 16538320 (+)
XLOC_011342 foxn3 coding downstream 31852 16564921 ~ 16734329 (+)
XLOC_011343 ston2 coding downstream 222218 16755287 ~ 16808413 (+)
XLOC_011344 dio2 coding downstream 340348 16873417 ~ 16876752 (+)
XLOC_011345 NA coding downstream 531153 17064222 ~ 17065104 (+)
XLOC_011334 CR450701.1 non-coding upstream 522174 15901425 ~ 15901547 (+)
XLOC_011330 NA non-coding upstream 827700 15595784 ~ 15596021 (+)
XLOC_011327 CU306817.2 non-coding upstream 906489 15517118 ~ 15517232 (+)
XLOC_011323 NA non-coding upstream 1105504 15297233 ~ 15318217 (+)
XLOC_011346 NA non-coding downstream 1162766 17695835 ~ 17701349 (+)
XLOC_011350 NA non-coding downstream 1381271 17914340 ~ 18025691 (+)
XLOC_011353 NA non-coding downstream 1704137 18237206 ~ 18548834 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_00300407_00313434 NA coding CI01000032 null 299755 ~ 313642 (-)