XLOC_011342 (foxn3)


Basic Information

Item Value
gene id XLOC_011342
gene name foxn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 16564921 ~ 16734329 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022610
tgtttcaaatttaccaataatataaaaatttttcCTCCAGGTAATGCATGTTAATCATCTTTCCATCACTGTCCAACAACACACACTCCAACAGTGGATGTAGCACAGCGCAGGACTCCGCAGCCGTCTGTAGAGTGTAGCCCTGGGTTACACACCGAACAATGGCATTCTTTCAGTCAACACTGGAGACACTAGGACCCAGCGAGGCTCTTCCTTCCTCATCAGGCTCCCTTAGTTCCAGAGCACAGCAAGTGGTCTCAGAACAGAgtgcaaagagagagagagaaagagggagggagAGAAAAAAGCTCAGTGAATGTTAGAGCCAACTGTGGTCACTGCTGAAACACTGAATCTGAGAGAAATGGAGGGATTAACCAGTCGGATTTAAAAATCTGGAGCTCATGCAGAGGCAGCCAATCAGGGGACGATCTGGATTAAaaagGAGCCTTGGTCTAAATGGGTCCGGTTATGCCTCCCAGTAAGAAGCCGGAAAGTTCTGGGGTCAGCGTGGCGAGCGGCCTGAGCCAGTTCTATCAGGCCAGCTCCATCACCAGAGCCCTGCAGGAGGCTGAGGAGATGGACCTGGCTCTTCCCACCATCAAACTGGAGAAGGGGAGCGTGGAGGACGAGGAGCTCACCAACCTCAACTGGCTCCACGAGAGCAAAAATCTGCTCAACAGCTTCGGTGACCCCGTGCTGAGGAGCGTCAGTCCCGTCCAGGATCTGGACGATGACACCCCGCCTTCTCCAGCCCACTCGGACCTCCCATATGATGCCAAGCAGAACCCAAACTGCAAACCTCCTTATTCATTCAGCTGTCTCATCTTCATGGCCATAGAAGATGCTCCTTCCAAGAGACTGCCGGTTAAAGACATTTACAACTGGATTCTGGAACACTTCCCTTACTTTGCCAATGCCCCCACGGGGTGGAAGAACTCTGTCAGGCACAATCTCTCCCTCAATAAGTGTTTTAAGAAAGTGGACAAGGACAGGAGTCAGAGTATTGGGAAGGGCTCCCTGTGGTGCATAGACCCAGAATACAGACAGAATCTCATCCAGGCACTGAAGAAGACGCCTTATCATCCCTATTCCCAGGTGTTCACCACACCTCCCACCTCTCCTCAGGCATATCAAAGTATGTCCAGTCCTCCAATATGGCCAGGAAGTCccttttacaggaaaaacaagGGAGTCCTACTACAAGTTCCTCAGGGAGTGATCCAGAACGGAGCTCGAATGATGAGCCAGGGCCTCTTCCCAGGAATCCGACCCCTTCCCATCAACCCCATCGTCAGCAGGACAGCTGCTGTCAGGTCAGTACTGGGATACAGAATCACCAGTGACACTGAACCAACCCAAAACTCTCCACTGGCCACCAGCGACCCCAAGGAGGACCACACCTACAGTTTCGCCAAATCTTCCGGCTCGGATGCTGAAGAGGAGGCACAGTGTGATGGAAGTGAGCTCAACTTCCACACTAATGAGACCGGCAGCGATGCGGAGGACGACGATAAGAGTAAAATCAAGAAGGAGCCCAAGGAGTGGTCAGTGGACGCCCTCGCTCTGGCCCAGCACAAGAAACGGCAACTTTTGACAAAAGTCAAACAGAGAGTGGCCAGTGACACTCTTCCTCTAAAAAAGAGGCGCACGGAGAAGCCTCCGGAAAGTGACGACGAGGAGATGAAAGAGGCCGCCGGATCCCTGCTTCATTTGGCAGGAGTCCGGGCCTGTTTGAACAATATCACCAACCGGACGGCAAAGGGGCAGAAAGAGCAAAAATAATGAACAGACTATtgtaaagaggaaaaaaaaaacatcactttgAATAGAATTTACTATTTTTTTCCAGGACATCAGGTGAATTCTACTGATTTGTGGCAATATCAACAATCACTTTGTTTTCCTATCTTTATAGGTGACATTTTACTGAGGGTTCCTTGTTTTACTTTGCTAATTTTATTGTGTTGtcgtttttcttttctttttaatctaCGGAGATTGAAGCCATAGCCTTCCCCTTTTTAGGAAATTACTTCATTCGAATAAGACGACAAAAAAGTGATAGCAAAATTTGCTATGCTCCCCTCTGTCATAGACAGCAAAACCACTAAAAGTTCTGCAGCTTCTTCCTAAATTTGTGGTGCAGATTGACAGAGTAGTTCTCAAGGCAGGATGAGAAATTTTCACACATCAGACATGCTATGACAGCAGTCAAAATAGTTAGTCTAATAGCCGTAGAAGTAGTTCACTTCAAGAAATAAACAGTTTgtcaacactttacaataaggttgtattagttaatgttattaacTGCATTCAATAacgtga
>TCONS_00022611
AGAgtgcaaagagagagagagaaagagggagggagAGAAAAAAGCTCAGTGAATGTTAGAGCCAACTGTGGTCACTGCTGAAACACTGAATCTGAGAGAAATGGAGGGATTAACCAGTCGGATTTAAAAATCTGGAGCTCATGCAGAGGCAGCCAATCAGGGGACGATCTGGATTAAaaagGAGCCTTGGTCTAAATGGGTCCGGTTATGCCTCCCAGTAAGAAGCCGGAAAGTTCTGGGGTCAGCGTGGCGAGCGGCCTGAGCCAGTTCTATCAGGCCAGCTCCATCACCAGAGCCCTGCAGGAGGCTGAGGAGATGGACCTGGCTCTTCCCACCATCAAACTGGAGAAGGGGAGCGTGGAGGACGAGGAGCTCACCAACCTCAACTGGCTCCACGAGAGCAAAAATCTGCTCAACAGCTTCGGTGACCCCGTGCTGAGGAGCGTCAGTCCCGTCCAGGATCTGGACGATGACACCCCGCCTTCTCCAGCCCACTCGGACCTCCCATATGATGCCAAGCAGAACCCAAACTGCAAACCTCCTTATTCATTCAGCTGTCTCATCTTCATGGCCATAGAAGATGCTCCTTCCAAGAGACTGCCGGTTAAAGACATTTACAACTGGATTCTGGAACACTTCCCTTACTTTGCCAATGCCCCCACGGGGTGGAAGAACTCTGTCAGGCACAATCTCTCCCTCAATAAGTGTTTTAAGAAAGTGGACAAGGACAGGAGTCAGAGTATTGGGAAGGGCTCCCTGTGGTGCATAGACCCAGAATACAGACAGAATCTCATCCAGGCACTGAAGAAGACGCCTTATCATCCCTATTCCCAGGTGTTCACCACACCTCCCACCTCTCCTCAGGCATATCAAAGTATGTCCAGTCCTCCAATATGGCCAGGAAGTCccttttacaggaaaaacaagGGAGTCCTACTACAAGGTAAAGTTACTTTACATGCTTTGAACCATCTCTGTGTTTTTGGTTTCCCTGAAATGTGCTATTTTTTTCTTAAGAAGTGATCTTGGTGTTTTTGCTTGCTCTTTAGATCAGCCTTTCCTTCAACAAAAGGCTCATATCCGTGTACCTGGCTTACTGTTACAGGAATTAGTTGAGTGggtgtttgtttggtttgtttgccCTGGTTTATAAAGAGTCGTGTCAAATCGGAGTGTTTTTCCTCACCTCTTTTCAGTGTGGTATTTGGATCCTGCCAGTCTTTCAGTTGCTACCTGTCTCTGTCTGATTCTGTCATCCAGAGATCTTTCTCTTTTTCAGTTCTGACTTGTTGAAGTCTTTTCTCCCATGTTAAACAAACAAAGGCGAAGGAGCTAAATGGATCAAATGAGTCAATGTCTTGGCCTAACCTTTTTTCCATAAGCTTGTATGATTTCTTTCACTTTATTGCTTTCAGATATTTGcaacagcatttgtttttttattataaaaaattataaatatatatataaaaaatgtaaatatttaaataaatgaacgcACTATATGTTGTTAAAAGattaatataatgtatacattTGCACTCCcttacacaatttaaaaaaaataattagtataaataatatttagaaacaaaaagtatgttgtttaaaaatgctgtaaatatataaataaatatattaataaaatatattaataaaaaataattcccaaacaaaaatctatcattttagtttaatatatttataaataatcacaataaatattactttatattaatattaaatgtcaaAAACATATGAATGTGAGATTTTTGTACATATTTGCACTCCCTAACACATTTACCCATGTTATTCTAGACtcagatcaatcaatcaataacaactcgttttggttttaaaattgGGGGTAGTTTTACATATATATACTacagaaataatgaatgaatgaaatttcaaaACCAAACATTTTCGGTGACACATGACACACAAACCATTCTATAGTTGAAagagcagcatttatttaaaatagaaattatttataacattataaataacTCTACTGTGCCATTTGATTGATTTAATACATCCTTATTGCACAGTTTTGAATGTCAGTGTGTAAAATATTCCACCATTAGAAGAAAAAGTACAGGTTTAATGCTCATGGCTTGTCTAAAAAGCTAATAGTTTTGTACACAGAAGCCTTTTAAAGTTGAATCTGTGATAGCAAGCCTTTTAAAACGAGACCTTGTGTCTGTTTCCTTGTGCGTTTTAATAATGACTGCAATGAAATGCCTTATTACTCTCATTAGTCTCAGCAGGCAGAGGACTGGATGGGCTGTTGTGCACTTTTATTCGGTATCATGATCCCAGTAAATGTCATGGTAACAGTTACAGtgttttttattaagtttatttagtCAATGTAAAGTAGCAGTAAGTAATGTTTAAAGGGTAATAGAGTCACTGTTGACTATGTGACGTTTGCTGCTTTTTATTGAAGGagaggcaaggcaagtttatttactgtatatagcaTTGTTCatgcacaatggtaattcaaagtgtaGTACATAAACagcaataaaagaaacaagtgtaagaaaataaaaacaaagaataaaaaatgatgaaaacagattaaaatgtgttaaataggtta

Function

symbol description
foxn3 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in female organism and male organism. Orthologous to human FOXN3 (forkhead box N3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-39 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in female organism and male organism. Orthologous to human FOXN3 (forkhead box N3).

Ensembl:

ensembl_id ENSDARG00000012833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022610 False 2331 mRNA 0.48 6 16564921 16734329
TCONS_00022611 True 2620 mRNA 0.38 4 16565185 16684877

Neighbor

gene id symbol gene type direction distance location
XLOC_011341 BX927159.1 coding upstream 26601 16538205 ~ 16538320 (+)
XLOC_011340 efcab11 coding upstream 31852 16423721 ~ 16533069 (+)
XLOC_011339 kif13ba coding upstream 281107 16192486 ~ 16283814 (+)
XLOC_011338 NA coding upstream 443958 16110171 ~ 16120963 (+)
XLOC_011337 znf395a coding upstream 456537 16090160 ~ 16108384 (+)
XLOC_011343 ston2 coding downstream 20958 16755287 ~ 16808413 (+)
XLOC_011344 dio2 coding downstream 139088 16873417 ~ 16876752 (+)
XLOC_011345 NA coding downstream 329893 17064222 ~ 17065104 (+)
XLOC_011346 NA coding downstream 961506 17695835 ~ 17701349 (+)
XLOC_011347 alkbh1 coding downstream 1030650 17764979 ~ 17775192 (+)
XLOC_011334 CR450701.1 non-coding upstream 663374 15901425 ~ 15901547 (+)
XLOC_011330 NA non-coding upstream 968900 15595784 ~ 15596021 (+)
XLOC_011327 CU306817.2 non-coding upstream 1047689 15517118 ~ 15517232 (+)
XLOC_011350 NA non-coding downstream 1180011 17914340 ~ 18025691 (+)
XLOC_011353 NA non-coding downstream 1502877 18237206 ~ 18548834 (+)
XLOC_011354 NA non-coding downstream 1891264 18625593 ~ 18685357 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_00145865_00181144 FOXN3 coding CI01000032 null 145865 ~ 181144 (-)
bowfin (Amia calva) AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding CM030141.1 CM030141.1 17612034 ~ 17640564 (-)