XLOC_011357 (si:dkey-288a3.2)


Basic Information

Item Value
gene id XLOC_011357
gene name si:dkey-288a3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 18810904 ~ 18872150 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022635
CAACCCTGCCTATTCGCGCCAAACAAAGCGTGTCTGTTTACTTGTTCACATTCTCGGgtttgttttgtcattattatgttgtttattttctcTCATAAGGGAGCATCAGCTTTGCTAGACATGGTTTTGTACTACGAATCGGCTACACACCTCGACGTTTCTGCGAACTCAGGCATGGGATTCTCCGGTTGGCTTTCACTGTCCCATCTTCTCAGACAGAGTGGATGCCTGTGGAGGCTGGATGCTTGCAACATGCCCATGGTGGACTACGCCGCGCAGGCCTTGTCAAAAGCCCTTCTCACTAGCAGGCTGACAGTGTTACACCTTGAAAACACCTGCCTGAGCGGCAAACCTCTCTTCACACTTGTCGGTGCTCTGAAAAGGAACGTGGCTTTGCAGGAGCTTTACCTCTCTGAAAACAACCTCAACGGCTATCAGGACTCCATGCAAGTTGCCGACCTGCTCAAATTCAACAACACTCTTAAAACCTTGGACCTAAGCAACAATGCCACATCTGACTCAGGTTTGGAGGAGATTTGCGATGCTTTGAGCTTTCAGAAGACCGGTTTGAGAACGCTGATACTGAGCAACAATCACATCACTCATCTTGGCATGAGCCATCTACAGAACGTTCTGCCCCGGTTAAAATCACTTGAAACGTTAAACCTTGGCAAAAACAACCTTGAGAACAGAGGCATTCACATGTTAAAGGAGTCCCTCATGATCAATCGCTCTTTATTGCAACTTGGCCTAGCTGCCACAGGAATAACCTGTGAGGGTGCTGTGACTTTGGCTGAGATTCTCGCAGAGAGTCCACAGATCCAGCGTTTGGATGTACGGCAGAACCAGGTGCTTGCTGGAGGCCTCATGGCTCTATCACTGGCCCTAAAGATCAACCGTTCACTCATCCGACTGGATCTGGACCAACACCTGAAAGAGGAGAAGGATGACTTCCTGATGGAAACGCAGAAGACTCTGCTTAGCAGGATCACCGATCTGTGCGCAGCAAACGCAACGGCTGCCAAGGGCACGAGTCTCCAGCCTGCTCCTCCAGACCCACCGGACTGCACCGAGACCACCGATGCGCTTCCCACCCAAAGTCTAGAAGACATATAAGCATAATAATTCTACAGCAAATAACGATAACCATAAAACTCCAAATCCCAGTAATAAAGCCGAAGCTTCTCTCCCTAATGAAACAGTGGCCCTCCTGCTGTTTCCTGCCTAATGTTCCCGCCGAGGCTTCCTCCACTTTCCATAAAGCAATTTTGCAAGCCCACTCCCAACGTGAATCATCTGGAAAGGAAGAGAAGCCTCTCCCTCCATCTCTCCTCGTGTCCCCGGAGGGTGACGCTGACTAAATCTGTGTTGATACAGAGGTGTGCTCTAAATCCTGTTTGCTCGGGCTCCATCTCCCCTAATATTCACACTCGTGTATGAGGCCCCTTCCCTGCCTGCGTCTGCTAATGTGGCGTATCGTCGTCTGGATGACAAGAAGACATCGGCGAGCGCCTCAAACTCCCTCACACGTATCGTTTACTGCCGGCGCGGAGAATCACAATGTGTGGGAAGGAGAACATATGTTAAATTTAAGAAGCTGGGATTTACCTCTGCACGGGTCTTAGTTTACACGCGCTACTCGCCGCTAGCCGGCAACAAAGGACAGATCGCCGTTACAGTGCGGAAGCAATGGAAAAGGTGTTACATCTGAAAATATAGGTGGAACTCGCATCATCTGCCGTTTGTCTTTAAATTCAATGCAATTAAGAGCATGTTTGTGAAATGATGAACAACCTTTCTGAGTTAATAAATGAGTTTGACGTTGGTAGATTTGATTTGAATCTCCGTTAACTTTTCCAAGCTCTGTTTAAAAATAGACCTGCGTGATTTTTTTTCACCCTAAATAATTAGATTTAATTTTCACAACATGTGCCATTAATTTATTACCAATTATTGGTGTTTACCTGATAATTCTTCAAAAGGAGAAACTTGAAATGCAGCTGCACGGAAGACGTCTGCTTCTAAAATAAGACAAACGGTTCCACGCGCATTGCATatcaaaaactacagtattggcaCTCGGAGATTTGAATGCCTTTCTTGGCAAATCCCAAATTACTCAAAGATTTGGTGATTGACAGCTGAGGGGGGATAACTGTATTTAGCCAGGGACCATGTTTCCTCGTCTGGCGTGATTTGGGTCTCATGGAGGATCGGCCCCCCTGGTGGTTGCCCCCCTCCTCCTCTCGGCACGGGGCAGGGGCAGATTGACAGAACAGCATGGGGGCAAGCGCCACTGTGCCAACAGCCCCCTCCACGCTCTACCTGATGTTTTTAACAAAGGCTTCCGTCTCCCCAACTCCTCTGCCGAACATCGCCCAGCCAGATTCAACCCACCTCGGCTCCGCAACAAACACATTTTGAAAGCCGATCGCGAGGATGTTGGGAACAGATGCACAGACGCTAGCAATGATGCGGCGTCTACGGCTGCACTCAAAGATAAAATGTCACACACTTTTCAGTCGGAGCCCAAGAAATTGGACAGTTGTTAGTGAGCACCTGCTTGTCATTGACGGGAGGATATTGGCGGCTTGTTTTCTTTGATTTGtatgtttagttttgtgttgaGGGAGACCGACCGGGGTTAGCTGTTACAGTTTTTGACTTTAGGAAATGTTCTGCCGtgttggtttgtttttaataGTATGGCCATGAGTACTGAGtttggaaaataataaaacatacagaAACAAATTCCAATgtggaatttaaataaaaaatgtagctcAGGGCTTGTTGTCAcaattattatatacagttgaagtcagagttaatagcccccctgtttatttgctTTTTCCAATATCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-351 No description available

Ensembl:

ensembl_id ENSDARG00000089780

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022635 True 2869 mRNA 0.47 7 18810904 18872150

Neighbor

gene id symbol gene type direction distance location
XLOC_011355 NA coding upstream 10358 18798007 ~ 18800546 (+)
XLOC_011356 CU929218.1 coding upstream 11773 18798995 ~ 18799131 (+)
XLOC_011354 NA coding upstream 125547 18625593 ~ 18685357 (+)
XLOC_011353 NA coding upstream 262070 18237206 ~ 18548834 (+)
XLOC_011352 bcl11ba coding upstream 630157 18117029 ~ 18180747 (+)
XLOC_011358 NA coding downstream 26545 18898695 ~ 19269379 (+)
XLOC_011359 NA coding downstream 145380 19017530 ~ 19020033 (+)
XLOC_011360 NA coding downstream 336325 19208475 ~ 19300172 (+)
XLOC_011361 NA coding downstream 434912 19307062 ~ 19307406 (+)
XLOC_011362 kif11 coding downstream 608899 19481049 ~ 19497006 (+)
XLOC_011350 NA non-coding upstream 785213 17914340 ~ 18025691 (+)
XLOC_011364 CU571091.1 non-coding downstream 641421 19513571 ~ 19531819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000106_01286894_01318346 NA coding CI01000106 null 1286894 ~ 1318468 (+)