CI01000120_00308876_00311801


Basic Information

Item Value
gene id CI01000120_00308876_00311801
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 308688 ~ 311900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000120_00308876_00311801.mRNA
GCATATAAGAATGTGTGATTTGTACATTTCAACATCACAGGCAAGAGGAATGTTGAAAATTCAAGTCTCACCCTGCCAGACCACAGAGATCCCCCAAGGCTATATAGTACAAGGTTTGATTGTACTGATTAATGTTAGTTGTACATGACGAACAATTTTAAGGAGGCGCCATAGAGTATAAATTCCCCATGCTGATACAATCAATTACATTGCTTAGAGGTTCATTCGTCTTACAGGTACTTCCTTTACAGACAAAAAAGAAAAGAAATAAAATGTCGGACAGCCAAGAAATTATGGTCGCAAGTAGCCCCGACTTTGTTACGGAGCTTCTTCCATCTGCTCAGCGTACAGCTTTGCTCTACCATCTCTCTTACCTCTGTCTGGCTAAGTTCCCCAAGTTGGAGAGGGTTCTCCGAGAGCGTGCTGTTGAAACTCAGCTTCTCTTTGGGTCCTCGGAGGCTCTTCTGCTGAAGTGTGCGGCCACAAGTAAAAACCTGGTTTCCACGCTGCTGCCTGCGCTGATGATTGCTGTTGAAAAGGATAAAAGCATTTTGGCTATTAAGTCCCTGGAAAAAGCCAGACAATGGATCATGGAAATTGTTGAAAAAGTGGGACAGATGGTAGACAGATATGAGAAACACAACCACAGTGTGGCTTCCTGCACCAGTGATGTAATTCTTGAAAAGGCTGAGACAGAAAAAAAAAAAGAACAAACTAATATGGACATACAGGCTCAGGAGACGGCGGTGAGGGAACTCGAAGATCAACTGAAGAAAAACAATGAGAAAATTAGACAAATTGATGCAAATATTGCACAGAAAAACGCTGAGCTGTATAATCATGTCAAAGACACTTCTACCAAAAGTAATGGTCTGAGTATCTTTGCTGCCCTTGTACCATTTGTTGGACCCCTTGTTAAATCCATTTGTGATGCTAAAACTGCCCCTGGTGTAGCTGCAAAAACCCAGATTCTGACCAGCGAATTGTCTCAACTCTCCATTGAGAAATCAAGCCTGATGAGCATGGAGTGGAACATCCATGTCAGGATGACTGATATGCAGTTGAAGTTGGCAAGCATGAAAATAGAAAATGGTTCAATACCGGATCCTGTCCATCTGAATGATGTACAAAAATGCCTTTCCCGAATCCAAAACATTCTGATTCAGCTTCAGAAGTTCTGGGAATCAGTGAGTGTAATGCTGGAGGCTCTCAAAGATGAGACTTTTGCTAATGAACACTTCATTGAGGAGAGTGAAATGAAGGAGGTCTTTCTGGATTCTATTCGTACAGCAAAAGGGCATTGGAAAGCCTTCGGTGAATCCTGTCTGAATGCAAAGAGCATCTTTAGCTTGCAGACTAAAGATGCGTATAAGTTCCTGGAGACCAGCCCATCTACATTGTCACCAGAGGAGTGGAAAAAACAGTATGACGCTGTTATAGTGGATCTGAACAAAATAAATCTTGATCCCTTCACTCCAAAAGAACCAGCTCCCATTACTCAGTAATGTAGAAACATAAGAAGTCTTTACAGTACAAGTAGCGTACATACCTATAATGTTTCACGCTTACTGCTTTGAATAACACTTACTTATGATGCTGTTTTA

Function

NR:

description
hypothetical protein cypCar_00039823, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000120_00308876_00311801.mRNA True 1604 mRNA 0.42 7 308688 311900

Neighbor

gene id symbol gene type direction distance location
CI01000120_00149999_00157598 NA coding upstream 150017 149999 ~ 158671 (+)
CI01000120_00051711_00088727 DUSP8, DUSP8A coding upstream 219961 51711 ~ 88727 (+)
CI01000120_00002703_00007355 NA coding upstream 300759 2703 ~ 7929 (+)
CI01000120_00322439_00323110 NA coding downstream 10447 322347 ~ 323212 (+)
CI01000120_00451804_00456525 NA coding downstream 137630 449530 ~ 457774 (+)
CI01000120_00459245_00460500 MYOD1, MYOD2, MYOD1C coding downstream 147127 459027 ~ 461043 (+)
CI01000120_00477162_00480891 NA coding downstream 165099 476999 ~ 481125 (+)
CI01000120_00612213_00613803 NA coding downstream 300313 612213 ~ 614230 (+)
G338185 NA non-coding upstream 13086 295313 ~ 295602 (+)
G338156 NA non-coding upstream 89140 219245 ~ 219548 (+)
G338124 NA non-coding upstream 138971 169438 ~ 169717 (+)
G338110 NA non-coding upstream 139426 163941 ~ 169262 (+)
G338134 NA non-coding upstream 209318 99111 ~ 99370 (+)
G338188 NA non-coding downstream 12135 324035 ~ 324462 (+)
G338189 NA non-coding downstream 12615 324515 ~ 324771 (+)
G338190 NA non-coding downstream 12978 324878 ~ 353140 (+)
G338233 NA non-coding downstream 87444 399344 ~ 399553 (+)
G338223 NA non-coding downstream 102314 414214 ~ 464433 (+)
G338386 NA other downstream 451377 763277 ~ 763643 (+)
G338458 NA other downstream 552658 864558 ~ 865315 (+)
G338464 NA other downstream 566911 878811 ~ 879593 (+)
G338508 NA other downstream 695165 1007065 ~ 1009403 (+)
CI01000120_01141788_01144915 DYNLRB2, DYNLRB2.L other downstream 827940 1141788 ~ 1145086 (+)

Expression


Co-expression Network