CI01000120_00459245_00460500 (MYOD1, MYOD2, MYOD1C)


Basic Information

Item Value
gene id CI01000120_00459245_00460500
gene name MYOD1, MYOD2, MYOD1C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 459027 ~ 461043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000120_00459245_00460500.mRNA
GTATATAAACAGGCCGTGATCTCTCACCAGCAACAAGTACCTGAAGGGTACAAGCAAAGAAACCTTTTGACGACCTGCGGTTTTTAAACGGTTGTCTTGAGCAATACGTTGTTTCAGGATCTGAAGGAATTTGTCTTAATATTCCTAAGTCCTTAAAAACTTTACTACTTGAGAAGCATTCAAGTAGCTATAAGCCATTTTTACCTTAACACATAAAGATGGAGTTGTCGGATATTCCCTTCCCCATCTCATCAGCTGATGAATTCTACGACGACCCTTGCTTCAACACCAACGACATGCACTTCTTTGAAGACCTGGACCCCAGGCTCGTCCACGTGAGCCTGCTCAAGCCCGACGAGCATCACCACATCGAGGACGAGCACGTGAGGGCACCCAGTGGGCATCATCAGGCCGGCAGGTGCCTGCTGTGGGCATGCAAAGCCTGCAAGAGAAAAACAACCAACGCTGACCGCCGCAAAGCCGCCACCATGAGGGAGAGGAGACGACTGAGCAAAGTCAACGACGCTTTCGAGACCCTCAAGAGATGCACGTCCACCAACCCGAACCAGAGGCTGCCCAAAGTGGAGATTCTGAGAAACGCCATTAGTTACATCGAGTCTCTGCAGGCGCTACTTAGGAGTCAAGAGGAAAACTACTACCCTGTTCTGGAGCATTACAGCGGAGACTCTGATGCCTCCAGCCCGAGATCCAACTGCTCTGATGGCATGATGGATTTCATGGGTCCTACATGTCAGTCGAGAAGACGGAACAGTTATGACAGCTCTTACTTCAACGACACGCCAAATGCTGACGCACGGAATAATAAAAGCTCAGTGGTGTCGAGTTTGGATTGTCTGTCGAGTATCGTGGAGCGAATTTCCACAGAGACCCCCGCGTGTCCCGTGCTGTCAGTACCGGAGGGGCACGAAGGGAGTCCGTGTTCTCCGCAGGAGGGGTCCGTCCTGAGTGAGAGCGGGGCTCCTGCACAGTCCCCGACCAACTGCCCTCAACAGCAGGCTCAGGATCCCATCTATCAAGTGCTTTAAAGATCCGGTACATTTCAAAACAAATCGAAAGGGACAATTTGAATCAAGAAGCATTCAACCGAAAAATGACAAATCCGATCTTAACGACAAAAGAAAGACTATTTCGATCCACTGCTGGAAACTAGGAACGAATGATCTTTCTTTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTATGCTGTGGGAAATCTAATTCCTTTATGAAAAAGGCAAGTGAGTTTCTTAACTACGATTATTTATATTATTGTATCCATGTGAAAATGTGACCATATTTTTTTCCCCCTTTTGTGAATATATTTTCTGTCACCATCAGCTTTTATTTCCTAATTATTTACGAGAGAATCGTAATCCAGATACGGATAGTAGGACCACTTTTGTATATGTGTAAATAAGATCTGTTTTGTTAAAGCGACGAAAACGAACAAACATATTATTGTATTTAATGATGCCTGTTTGAAACACTAGCTTGTTGTGTCTTGTGTTAAACTTTATATTTATACTTCTTAAACGAGTGAATGTCGGATTA

Function

symbol description
myod1 Predicted to enable DNA binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and promoter-specific chromatin binding activity. Acts upstream of or within muscle organ development and striated muscle cell development. Located in nucleus. Is expressed in several structures, including head; mesoderm; musculature system; presumptive mesoderm; and trunk. Orthologous to human MYOD1 (myogenic differentiation 1).

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000120_00459245_00460500.mRNA True 1589 mRNA 0.45 3 459027 461043

Neighbor

gene id symbol gene type direction distance location
CI01000120_00451804_00456525 NA coding upstream 1253 449530 ~ 457774 (+)
CI01000120_00322439_00323110 NA coding upstream 135815 322347 ~ 323212 (+)
CI01000120_00308876_00311801 NA coding upstream 147127 308688 ~ 311900 (+)
CI01000120_00149999_00157598 NA coding upstream 300356 149999 ~ 158671 (+)
CI01000120_00051711_00088727 DUSP8, DUSP8A coding upstream 370300 51711 ~ 88727 (+)
CI01000120_00477162_00480891 NA coding downstream 15956 476999 ~ 481125 (+)
CI01000120_00612213_00613803 NA coding downstream 151170 612213 ~ 614230 (+)
CI01000120_00639875_00643491 RASK, KRAS coding downstream 178008 639051 ~ 643520 (+)
CI01000120_00704598_00707678 NA coding downstream 243244 704287 ~ 708495 (+)
CI01000120_00731213_00760512 NA coding downstream 269937 730936 ~ 760760 (+)
G338233 NA non-coding upstream 59474 399344 ~ 399553 (+)
G338190 NA non-coding upstream 105887 324878 ~ 353140 (+)
G338189 NA non-coding upstream 134256 324515 ~ 324771 (+)
G338188 NA non-coding upstream 134565 324035 ~ 324462 (+)
G338185 NA non-coding upstream 163425 295313 ~ 295602 (+)
G338273 NA non-coding downstream 66583 527626 ~ 527848 (+)
G338209 NA non-coding downstream 77793 538836 ~ 554633 (+)
G338281 NA non-coding downstream 95302 556345 ~ 556563 (+)
G338283 NA non-coding downstream 98409 559452 ~ 559690 (+)
G338219 NA non-coding downstream 100913 561956 ~ 567392 (+)
G338386 NA other downstream 302234 763277 ~ 763643 (+)
G338458 NA other downstream 403515 864558 ~ 865315 (+)
G338464 NA other downstream 417768 878811 ~ 879593 (+)
G338508 NA other downstream 546022 1007065 ~ 1009403 (+)
CI01000120_01141788_01144915 DYNLRB2, DYNLRB2.L other downstream 678797 1141788 ~ 1145086 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024778 myod1 coding NC_007136.7 CM002909.2 31421253 ~ 31423493 (-)