XLOC_011358


Basic Information

Item Value
gene id XLOC_011358
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 18898695 ~ 19269379 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024662
CAGCAATCAAGTATTTCAGCGTTTGGTTCAGCTTGCTATTTTCTGCTCAGTGGGAAGAACTGGCTGAGAAGTAGAAAACCTGGAATGGAGCTGGAGCCAAGGGAATACTGAACATGCTGGAAGAGGGCTTCAGAGTCTGATGGCTACATTTTAGCCATTCAAGATGCAGCTGACTTGCGACAGAATGCTAGTGCTCCAGACTGTCCAGGCTATTTGCCAAGactgtggattaaagTGCATAAAGTAAAGTCATCCATCACCCCCTCTGACAGAGGACGAAATGGGGTCCATGTCGCCAAGATCCCCTGGAGTATCTCTGCTGCCCCTTTGCGCCAATGCAACAGATCCAGAGATCATCAAGGCCATATGTCATTAAAATGGCTAAAATGGAAAAGTA
>TCONS_00024663
CAGCAATCAAGTATTTCAGCGTTTGGTTCAGCTTGCTATTTTCTGCTCAGTGGGAAGAACTGGCTGAGAAGTAGAAAACCTGGAATGGAGCTGGAGCCAAGGGAATACTGAACATGCTGGAAGAGGGCTTCAGAGTCTGATGGCTACATTTTAGCCATTCAAGATGCAGCTGACTTGCGACAGAATGCTAGTGCTCCAGACTGTCCAGGCTATTTGCCAAGactgtggattaaagTGCATAAAGTAAAGTCATCCATCACCCCCTCTGACAGAGGACGAAATGGGGTCCATGTCGCCAAGATCCCCTGGAGTATCTCTGCTGCCCCTTTGCGCCAATGCAACAGAAATTGTTCTTCattggactcaaaccctgtcatcgtgg
>TCONS_00024664
cttttcggTTGTTACCAGCTTGCCATGTACATCAGCTGACTTAAGactcagagaggagttgaccatgacaacagggtttgtggcaaagaacggttccagaaagcggGGTTCAGCTTGCTATTTTCTGCTCAGTGGGAAGAACTGGCTGAGAAGTAGAAAACCTGGAATGGAGCTGGAGCCAAGGGAATACTGAACATGCTGGAAGAGGGCTTCAGAGTCTGATGGCTACATTTTAGCCATTCAAGATGCAGCTGACTTGCGACAGAATGCTAGTGCTCCAGACTGTCCAGGCTATTTGCCAAGactgtggattaaaggtaataatttgTGCATAAAGTAAAGTCATCCATCACCCCCTCTGACAGAGGACGAAATGGGGTCCATGTCGCCAAGATCCCCTGGAGTATCTCTGCTGCCCCTTTGCGCCAATGCAAC
>TCONS_00024665
cttttcggTTGTTACCAGCTTGCCATGTACATCAGCTGACTTAAGactcagagaggagttgaccatgacaacagggtttgtggcaaagaacggttccagaaagcggGGTTCAGCTTGCTATTTTCTGCTCAGTGGGAAGAACTGGCTGAGAAGTAGAAAACCTGGAATGGAGCTGGAGCCAAGGGAATACTGAACATGCTGGAAGAGGGCTTCAGAGTCTGATGGCTACATTTTAGCCATTCAAGATGCAGCTGACTTGCGACAGAATGCTAGTGCTCCAGACTGTCCAGGCTATTTGCCAAGactgtggattaaagTGCATAAAGTAAAGTCATCCATCACCCCCTCTGACAGAGGACGAAATGGGGTCCATGTCGCCAAGATCCCCTGGAGTATCTCTGCTGCCCCTTTGCGCCAATGCAACAGATCCAGAGATCATCAAGGCCATATGTCATTAAAATGGCTAAAATGGAAAAGTA
>TCONS_00022636
CTAAATAGAAACCTAACTGATCATATGGCAGCTTGAAAATGGCTTCTTAAACTATACTTTGAGCAAAAGTATAAGTTATTAAATTGTGTTTATGACGCTTACTGCAGCTAGGAGGTAAAATGATTTTACTCTACTTTTCCGGATGTGTGTGACACAATTGGTTATTGCAATGAAGTCTTAGGATTAGGCTTTTTCATTGTTATCATTTATCTAAAATGTAACTTTGTTACccataacaattaaataaataatacaaactcACCTTGTAAAATGCTTATGTTTTCTAATTAGGGTTCAGCTTGCTATTTTCTGCTCAGTGGGAAGAACTGGCTGAGAAGTAGAAAACCTGGAATGGAGCTGGAGCCAAGGGAATACTGAACATGCTGGAAGAGGGCTTCAGAGTCTGATGGCTACATTTTAGCCATTCAAGATGCAGCTGACTTGCGACAGAATGCTAGTGCTCCAGACTGTCCAGGCTATTTGCCAAGactgtggattaaagTGCATAAAGTAAAGTCATCCATCACCCCCTCTGACAGAGGACGAAATGGGGTCCATGTCGCCAAGATCCCCTGGAGTATCTCTGCTGCCCCTTTGCGCCAATGCAACAGGACATCTGGGTCACTGGACTCATATGATTTATTCTTTTCAGTCCCCGgaggaaatgtgaaaagggcATTGAATGTCACCAGAGAGTTCCGGATCCCTTATGATTGACAGATACCCTTGTTGAGATGCCAACCAAATGAAATATGAATGCAGCTGTGTGCATTATGCTTGAATCACatgtgtagattttttttaaagatatatatattttaacatttcataTTCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117460

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024662 False 397 lncRNA 0.47 5 18898695 19139364
TCONS_00024663 False 382 lncRNA 0.48 5 18898695 19269379
TCONS_00024664 False 435 lncRNA 0.49 4 18910771 19078854
TCONS_00024665 False 479 lncRNA 0.48 5 18910771 19139364
TCONS_00022636 True 837 lncRNA 0.39 4 19023661 19184120

Neighbor

gene id symbol gene type direction distance location
XLOC_011357 si:dkey-288a3.2 coding upstream 26545 18810904 ~ 18872150 (+)
XLOC_011355 NA coding upstream 98149 18798007 ~ 18800546 (+)
XLOC_011356 CU929218.1 coding upstream 99564 18798995 ~ 18799131 (+)
XLOC_011354 NA coding upstream 213338 18625593 ~ 18685357 (+)
XLOC_011353 NA coding upstream 349861 18237206 ~ 18548834 (+)
XLOC_011361 NA coding downstream 37683 19307062 ~ 19307406 (+)
XLOC_011362 kif11 coding downstream 211670 19481049 ~ 19497006 (+)
XLOC_011363 slc22a15 coding downstream 229778 19499157 ~ 19511206 (+)
XLOC_011364 CU571091.1 coding downstream 244192 19513571 ~ 19531819 (+)
XLOC_011365 NA coding downstream 337541 19606920 ~ 19614265 (+)
XLOC_011350 NA non-coding upstream 873004 17914340 ~ 18025691 (+)
XLOC_011367 NA non-coding downstream 904439 20173818 ~ 20189395 (+)
XLOC_011370 NA non-coding downstream 982082 20251461 ~ 20437298 (+)

Expression


Co-expression Network