CI01000120_00731213_00760512


Basic Information

Item Value
gene id CI01000120_00731213_00760512
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 730936 ~ 760760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000120_00731213_00760512.mRNA
GCATAAATAAAAGTAATGATGGACAGATGAAACAGCATTGAGATGGAGGTGCAAAAACAGAGTTGAAAGAAGAGGGAAGTCCGGGATTGAGTCTTTCCCGCAAAATCACTGGCGCTGATGTATGAAGCATGCTACACTGACGCTCCAAATCTATCACCTAAGTCATAGACACATGATTCACTTCAGCCAAGAATCTGCATTTATGAATGATTGAATTGTGTGTGACTGTTAGAATGTACCTCTCTGCATACAAGTATCTCAGAAAGCCTCTGGATAGTCTGATCTCATTGTTTACACAGCCTCAAAACAAAGACGACCAGCCGGAAGTGCTCAGCATAGATGCGCCTGACCTCGTTCACCAGCTGACTAAGCCGTTAAGAGCACATGTTATCTTTATCCCTACTGATGCCAGTCTTTGTATGTGTGGCATTGATGCTGAGGAGATGGTGAGCATGACATCAGCTTTGGGCAGGTCAGCTGTCTGCCTGAGCAAAACAAACGTGTCTAAACAATGCCACATCTGGAGATGTAGAAGGGTGATTGAGAGAGAGAGCGACAAAAAGAAGAAAGAGTATGGAAAAGAAAAAACAGGGGGAGGGAGAGAAAGTAGACTAAGATACCGCAAATCCTATATAAGCCTACAGAAGACGCTGGACCGTGTCTGGACAGGCAGGATTGACTCTGGGATGTTCTGCATTGCAGTGACCTGGCCTTTGGGGCCATTGGGAAGTCGAAAGTACTTCATGGTGTGGATGGGTGGATTGACTCCAGAAAGATTTTACAAGAGTTTTTACTGGTATCTAGTGGGGCTTAGTAACCAAATACCACTTCCTTTGCTCCAGTGTCCAGGACAGGAACTTCTTTACTTGATGAAGACACATTATCCAGACTATAATGAGTTTCTCTCAGCTGCTGTCAGTAAGACAGTTAGGCAGGAGACACCGGGACAGGAAGTACCAGCTATGCCAGTAGCAGGACGCAAAGTTTGTCCCAGCCAAGAGAAGGCCAGTGATCTGCCAAAACAAACCTTCAACCACAACCAACTGCCAGTACAGGCTGTGACGTCAGGTTCGGGTCTCCTCATTGGATTAGGTCTCTCACCCACAACTCGAACTGCAACCAACAGAACTTTGTCTTTTAAACGGGAACATGAAATTAGAGAAGTGCTCGCGGGAGGACTGCCAGCAGCCATCATTGTGCTACAGGAAAACCCAAATCATCCGCACACTCTCGCTGGAGGAAAGGGTGATGACCTCTTTGACCCTGGGCCTGTGTGCGGGGCAGAAGGAGGTGGCTCATCCAATCACGCCACACACTGTGTAACCTTTCAGTCAACCTCTCAACATCTCCCAGAAGTCCATTTCTCACTGATCCTGCGTCAGTTTCCAGTTTTCTCGCCCATTTCAAACAAACGATCTCTGATCTACAGAAAACTGAGCAAATTTGACGGCGACTGTCTAAAACGCTTCCTTCCTGTGCATGTCTCCAGGACTCTCAAACACATATACACAACGATTTTGAAAAAAGAAAGGATGAAGACAGACAAAACAGAGCATAATCTCTCCATCTGCGCACCAAGCATCGCAGAATTACAGAGAGTCACTCAGGCCAGACCAAAATGGAAACAAGACCGGTACAGGCTGGAAAACATTACATTAGCCATTCTCCATGGTGACCGCACTCAGCCGAGTGAAGCTGTCTGTCCATCAAAGGTAACGCCGTGGGATCAGGGTACAGTATTCTATACGTCTAAACCTGACAGATCCTTGACATGTTTAGAAGCAGGCAGATTCAATCTGGATTGAATTCAGATAAAGACACAAAGTTCCTCATGAGCGCACACAGAAAGCACATCCCAGATGGAACCATGAGCCATTTCCATTTTGTCTCATAGCAAAAGTGTCAGGGAGGTTAGTGCGTATCATAGTGGCGAGGCCAGAAACTTTAAAGTGAGTGGACCTTGGTGAAATAGAGTGGACCTCAATGCCTACTCTCAAATTTGTGATTTATGGTCAGCCAACAGTTTCATGAAAACAACAAAATCCATTTATAA
>TU384847
ATTGGACACCCCTAGTCTACAGTACACACATAGGACAGGTGGATGCATAAATAAAAGTAATGATGGACAGATGAAACAGCATTGAGATGGAGGTGCAAAAACAGAGTTGAAAGAAGAGGGAAGTCCGGGATTGAGTCTTTCCCGCAAAATCACTGGCGCTGATGTATGAAGCATGCTACACTGACGCTCCAAATCTATCACCTAAGTCATAGACACATGATTCACTTCAGCCAAGAATCTGCATTTATGAATGATTGAATTGTGTGTGACTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000120_00731213_00760512.mRNA False 2053 mRNA 0.46 9 730980 760760
TU384847 True 275 lncRNA 0.42 1 730936 731210

Neighbor

gene id symbol gene type direction distance location
CI01000120_00704598_00707678 NA coding upstream 22485 704287 ~ 708495 (+)
CI01000120_00639875_00643491 RASK, KRAS coding upstream 87460 639051 ~ 643520 (+)
CI01000120_00612213_00613803 NA coding upstream 116750 612213 ~ 614230 (+)
CI01000120_00477162_00480891 NA coding upstream 249855 476999 ~ 481125 (+)
CI01000120_00459245_00460500 MYOD1, MYOD2, MYOD1C coding upstream 269937 459027 ~ 461043 (+)
CI01000120_01093808_01118807 NA coding downstream 333048 1093808 ~ 1118807 (+)
CI01000120_01141788_01144915 DYNLRB2, DYNLRB2.L coding downstream 381028 1141788 ~ 1145086 (+)
CI01000120_01194995_01221974 NA coding downstream 434235 1194995 ~ 1222463 (+)
CI01000120_01233281_01240955 SIGIRR coding downstream 472133 1232893 ~ 1241149 (+)
G338355 NA non-coding upstream 864 729642 ~ 730116 (+)
G338354 NA non-coding upstream 1991 728555 ~ 728989 (+)
G338353 NA non-coding upstream 2640 727901 ~ 728340 (+)
G338352 NA non-coding upstream 4329 726423 ~ 726651 (+)
G338350 NA non-coding upstream 6956 723604 ~ 724024 (+)
G338384 NA non-coding downstream 1005 761765 ~ 762079 (+)
G338388 NA non-coding downstream 6259 767019 ~ 767332 (+)
G338390 NA non-coding downstream 8365 769125 ~ 769473 (+)
G338391 NA non-coding downstream 10494 771254 ~ 771541 (+)
G338392 NA non-coding downstream 10895 771655 ~ 771978 (+)
G338386 NA other downstream 2517 763277 ~ 763643 (+)
G338458 NA other downstream 103798 864558 ~ 865315 (+)
G338464 NA other downstream 118051 878811 ~ 879593 (+)
G338508 NA other downstream 246305 1007065 ~ 1009403 (+)
G338357 NA non-coding downstream 381 731591 ~ 731791 (+)
G338358 NA non-coding downstream 1741 732951 ~ 733497 (+)
G338359 NA non-coding downstream 3075 734285 ~ 734602 (+)
G338360 NA non-coding downstream 3420 734630 ~ 734935 (+)
G338361 NA non-coding downstream 4006 735216 ~ 735703 (+)

Expression


Co-expression Network