G338209


Basic Information

Item Value
gene id G338209
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 538836 ~ 554633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU384686
TGTAATAGCAGCACCACAGTATTTATTAATTACAGTCAAAACAAGAGTGGAAGAGAGTGAATGAACCAAAACATGCATAATAAAACAAACATAAAACTAAGGATTTTTCCTCAGAAGCATTCATTTAATGGTCGTGGCTTTGTGATGATACACAGTTCTCTTTCAGGACGTACATACTGCGTGAAACAAATGCTCATTTGAGGCACTGAAAGCTAAAGACATAAACCTATTGCAAAAAGATAAATGTTTGCGTAGCACTGACAAATTCCTACAATAATTAAACAATGAAATGTCCAGGAATTTAGGCCTCGCCCTCAAACATCTTCTTCCTGCCTCCCATACCGGCCTTGTCCTCAACGTTCTTACGCCAGTCACCGACATCTTCTTCCTGCCACCCATACCAGCCTTATCCTCAATGTTCTTACGCCAGTCTCCAACATCACGCAGTTCTTTATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU384686 True 458 lncRNA 0.40 2 538836 554633

Neighbor

gene id symbol gene type direction distance location
CI01000120_00477162_00480891 NA coding upstream 57711 476999 ~ 481125 (+)
CI01000120_00459245_00460500 MYOD1, MYOD2, MYOD1C coding upstream 77793 459027 ~ 461043 (+)
CI01000120_00451804_00456525 NA coding upstream 81062 449530 ~ 457774 (+)
CI01000120_00322439_00323110 NA coding upstream 215624 322347 ~ 323212 (+)
CI01000120_00308876_00311801 NA coding upstream 226936 308688 ~ 311900 (+)
CI01000120_00612213_00613803 NA coding downstream 57580 612213 ~ 614230 (+)
CI01000120_00639875_00643491 RASK, KRAS coding downstream 84418 639051 ~ 643520 (+)
CI01000120_00704598_00707678 NA coding downstream 149654 704287 ~ 708495 (+)
CI01000120_00731213_00760512 NA coding downstream 176347 730936 ~ 760760 (+)
CI01000120_01093808_01118807 NA coding downstream 539175 1093808 ~ 1118807 (+)
G338273 NA non-coding upstream 10988 527626 ~ 527848 (+)
G338223 NA non-coding upstream 74403 414214 ~ 464433 (+)
G338233 NA non-coding upstream 139283 399344 ~ 399553 (+)
G338190 NA non-coding upstream 185696 324878 ~ 353140 (+)
G338189 NA non-coding upstream 214065 324515 ~ 324771 (+)
G338281 NA non-coding downstream 1712 556345 ~ 556563 (+)
G338283 NA non-coding downstream 4819 559452 ~ 559690 (+)
G338219 NA non-coding downstream 7323 561956 ~ 567392 (+)
G338289 NA non-coding downstream 27357 581990 ~ 582195 (+)
G338288 NA non-coding downstream 28173 582806 ~ 583474 (+)
G338386 NA other downstream 208644 763277 ~ 763643 (+)
G338458 NA other downstream 309925 864558 ~ 865315 (+)
G338464 NA other downstream 324178 878811 ~ 879593 (+)
G338508 NA other downstream 452432 1007065 ~ 1009403 (+)
CI01000120_01141788_01144915 DYNLRB2, DYNLRB2.L other downstream 585207 1141788 ~ 1145086 (+)

Expression


Co-expression Network