Gene
RNA
| Item | Value |
|---|---|
| gene id | G338219 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000120 |
| NCBI id | null |
| chromosome length | 1315255 |
| location | 561956 ~ 567392 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU384698 | True | 502 | lncRNA | 0.47 | 6 | 561956 | 567392 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000120_00477162_00480891 | NA | coding | upstream | 80831 | 476999 ~ 481125 (+) |
| CI01000120_00459245_00460500 | MYOD1, MYOD2, MYOD1C | coding | upstream | 100913 | 459027 ~ 461043 (+) |
| CI01000120_00451804_00456525 | NA | coding | upstream | 104182 | 449530 ~ 457774 (+) |
| CI01000120_00322439_00323110 | NA | coding | upstream | 238744 | 322347 ~ 323212 (+) |
| CI01000120_00308876_00311801 | NA | coding | upstream | 250056 | 308688 ~ 311900 (+) |
| CI01000120_00612213_00613803 | NA | coding | downstream | 44821 | 612213 ~ 614230 (+) |
| CI01000120_00639875_00643491 | RASK, KRAS | coding | downstream | 71659 | 639051 ~ 643520 (+) |
| CI01000120_00704598_00707678 | NA | coding | downstream | 136895 | 704287 ~ 708495 (+) |
| CI01000120_00731213_00760512 | NA | coding | downstream | 163588 | 730936 ~ 760760 (+) |
| CI01000120_01093808_01118807 | NA | coding | downstream | 526416 | 1093808 ~ 1118807 (+) |
| G338283 | NA | non-coding | upstream | 2266 | 559452 ~ 559690 (+) |
| G338281 | NA | non-coding | upstream | 5393 | 556345 ~ 556563 (+) |
| G338209 | NA | non-coding | upstream | 7323 | 538836 ~ 554633 (+) |
| G338273 | NA | non-coding | upstream | 34108 | 527626 ~ 527848 (+) |
| G338223 | NA | non-coding | upstream | 97523 | 414214 ~ 464433 (+) |
| G338289 | NA | non-coding | downstream | 14598 | 581990 ~ 582195 (+) |
| G338288 | NA | non-coding | downstream | 15414 | 582806 ~ 583474 (+) |
| G338290 | NA | non-coding | downstream | 17597 | 584989 ~ 585217 (+) |
| G338292 | NA | non-coding | downstream | 25342 | 592734 ~ 596342 (+) |
| G338119 | NA | non-coding | downstream | 31918 | 599310 ~ 599848 (+) |
| G338386 | NA | other | downstream | 195885 | 763277 ~ 763643 (+) |
| G338458 | NA | other | downstream | 297166 | 864558 ~ 865315 (+) |
| G338464 | NA | other | downstream | 311419 | 878811 ~ 879593 (+) |
| G338508 | NA | other | downstream | 439673 | 1007065 ~ 1009403 (+) |
| CI01000120_01141788_01144915 | DYNLRB2, DYNLRB2.L | other | downstream | 572448 | 1141788 ~ 1145086 (+) |
