G338292


Basic Information

Item Value
gene id G338292
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 592734 ~ 596342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU384771
TATTCTTACAGATTTTACAGATACAGATTTTATAACACAGCACATTTTACATGTTGAAGAAGGTACAAAATGTCCATTTTCCAGTGTACTTGTTGATGAGATAAAATAATGAATTCTGGATTATGCATTTCAAAATGTACCTGAGTGTTTAAAACATGACTGTGCAAAAGCAACTAATGAGTTCCTCAGCCTTTAGCATTCTGTAAACTTGCTCAAAGGAAGAAACCTCATTAAAATGCTGTAATTGGCCCACAAGTGTGCTGACAGCCTAATACTCACACCCTTATCTTGTGCTTACTGTAGTCACAAGAGAAATCAACGTGTGTATGTGTGTGTGTGAACACTCCAAACCTGATACAACTGTCTCGTGTCTGCATTTTCTAAACCTCAGCACTGAATGCAAGGGTTTAGAATTTAGTAGGGACGCTAGGGAATTTCCCTACCAATATCCAGTGACTACTGAATTGTCCCTAGCAGTAAGTTAGATCAAACTATTAAAATATATTTATATGTAACCACTGTTGTGGGTCATAACATTGACATTACCTGAGAAGTCAAAGTAAATGTTAAAAAACTGCTCTCTTTCAAGGATGTGCATTTAATGTCACATTAATTTTTAATATTAAAATAAAGTTATGTAGTACAGCGTCATTAAAGTCACCACAAAATCAAAAATTGATGATTCAGAATTTTACAGTGTTTATTAATAATTTTTTTAATCTTGCAGCGACGTCTCTTCTCTGATGATGTTTACTGGCGCGAGGGCGGGATCAACCTGTCACTCACATGAGATCCATCAATAGCAAACCACAACCATCCAATCAATTCCCAATGGACAAAATCAAGTCCCGCTCCACATTTTTTCTAGTTTGAGAAGCTGTTTCACTCTGATATACGTCACAATATGGAAGAAAAGAACATTGCAACTTCCATTTCATGCCAACTTTCATGACACTGACCGCCGAAAAACACCTTGCCTGTAAGTGCTCAACATGCACACTTATAATCAGTGTTGGGGAAAGTTATTTTTAAAAGTAATGCATTACAATATTGCATTACTCCCTAAAAAAGTAACTGATTACGTTTACTTTTTACAGAAAGTATTGTGTTACGTTACTTTTGCATTAGTTTTTCTCATCTGGGCTGGGCTGTTTGTTTGTTTGTTTTTATAACAACAAAAAAGTTATATTTTTGGCAAATCAAAAGTGAAGTGAATAAGCCTCAGGCTGAAGGAAATGCAAATTCACGCCTTTACAGTAGAGGGCGCAGCTCAAACAAACAAGCCTTTCAGCTGTGTTGCCATTCTGGAACACAGAAGAATAGGACACAGAAGAAGAAGTAAATGAGTAAATTTATGCACATATTTAGTCTAGAACTATGAATAACCGTCATGTTCACACAGCGCACACAACGCACTCCCGATTTCTCTCAACATGGGGACAGGAGAGCTGACAGTCAATAAAAGGGAACACAAAGTAACTTGTGTTGCTTATTTGAAAAAGTAACTCAGATATTTATTGTTGCAAATTTAAAAGTAATGCGTTACTTTACTAGTTACTTGAAAAAGTAATCTGATTACGTAACTCGCGTTACTTGTAATGCATTACACCGTGTCCTAACCAGACGCGACGCGACGCCGCGACAAGCGATAAAAGGTATCTTTTCCATGTTAATCGGAGTTTTTGTCCTAACCAGCCACGACGGCGACACGCGAATATTCTATTTTAGAAACGGTTTCTATTTCTCTGCGACGTCGCAGCTGAAACAGCAACACAAAGTATGGCAATGATAATATCAGGTACTGTTTATGTGCTTTATGTAATGTTAAAAATGTCTAACGTGAGTTTGAATATCGTTCTGTGTTCCCAGCTTTTTAGCTGTAATGAAAACAACACTGGCTAATTCACCTCAGATCTTTAAAATAAATAAATGGGCACAAGAACGTTCAAACTCAATGCGAACAAACAAGTGTATTCTATGACAAAGATTGGTTCAGTCACTCCGTATGTACTTTAAATAATGTTAATATAATAAAAAATTGTGTAATATTTATGAATTTTACTATGTACTTGCCCATTTCATTGTGTCTGCTGTGCTCTTGCCGAGAGAGCCCGCCCACACTCTCTTCTGATTGGGTGTGGTTTTTGATTGACTTTATCGCTTCTTATTTTTGCGTCGCGTCTAGTGTGGACAGTCAAATTGCTCGTCGCTGGAATCTTATCGCATCGTGTCTGGTTAGGACACGGTGTTACCCCCAACACTGCTTATAACATTACAGAACTGATCAATTGAAGTGATGTAGACTAAAAAGCTTAATTTCAATCCCTGAATAACATTTTTCTCCTAGTTATGAATGTACTGTATGCTTATTTAGATATTCTATCATAAAGTACAGAAAGCTAAATTGTAATGTAGTTGGTTTACATAATCAAAGTTATGTTATGCGTTATGATTGGGTTATCTACCATATCTACAAATAAAGGTTTTATAGAACATGAAACTGATTAGGACATGAAATTACCAATGTCAAAATCAAACTTACGCTCTTGACTGAACATAATATGAAATTTTACCCAAAACTTCAAAACATGAGAAGGACGTTGCAGTCAGTGGGAACTCTACAACTGTTTCTACAAAAAATAATTATTC
>TU384773
TATTCTTACAGATTTTACAGATACAGATTTTATAACACAGCACATTTTACATGTTGAAGAAGGTACAAAATGTCCATTTTCCAGTGTACTTGTTGATGAGATAAAATAATGAATTCTGGATTATGCATTTCAAAATGTACCTGAGTGTTTAAAACATGACTGTGCAAAAGCAACTAATGAGTTCCTCAGCCTTTAGCATTCTGTAAACTTGCTCAAAGGAAGAAACCTCATTAAAATGCTGTAATTGGCCCACAAGTGTGCTGACAGCCTAATACTCACACCCTTATCTTGTGCTTACTGTAGTCACAAGAGAAATCAACGTGTGTATGTGTGTGTGTGAACACTCCAAACCTGATACAACTGTCTCGTGTCTGCATTTTCTAAACCTCAGCACTGAATGCAAGGGTTTAGAATTTAGTAGGGACGCTAGGGAATTTCCCTACCAATATCCAGTGACTACTGAATTGTCCCTAGCAGTAAGTTAGATCAAACTATTAAAATATATTTATATGTAACCACTGTTGTGGGTCATAACATTGACATTACCTGAGAAGTCAAAGTAAATGTTAAAAAACTGCTCTCTTTCAAGGATGTGCATTTAATGTCACATTAATTTTTAATATTAAAATAAAGTTATGTAGTACAGCGTCATTAAAGTCACCACAAAATCAAAAATTGATGATTCAGAATTTTACAGTGTTTATTAATAATTTTTTTAATCTTGCAGCGACGTCTCTTCTCTGATGATGTTTACTGGCGCGAGGGCGGGATCAACCTGTCACTCACATGAGATCCATCAATAGCAAACCACAACCATCCAATCAATTCCCAATGGACAAAATCAAGTCCCGCTCCACATTTTTTCTAGTTTGAGAAGCTGTTTCACTCTGATATACGTCACAATATGGAAGAAAAGAACATTGCAACTTCCATTTCATGCCAACTTTCATGACACTGACCGCCG
>TU384776
AAGCTATTCGGTTACTTCCAAAATACTGAAAATGAAGGAAATTAAATGTTAGACTAAAACAATATGAACCATCATAAATAAATGAAAAAGAATGGCACGAAATAAGATAATTGGTCCATAGTCTGGGCATAAAAAGCATAAAGGAATGGGAACAACTTCTGGTTGTGAACAATTTGTCATGTTAGTAGAGGTTTCTCAGAAGTTTTTGTTTGTAAATGGGATCTTTAGCGTGTGTTTTAAGGCCAGCGTTGTGTCCACCTGTTCAGCAGAGAGTAATGTGTGCCACTGAGCCACAGGTTTGCGTGGGTTGGACAGCATATCCGCCCAGTGACGCAGCTGGTTTCCTGTAGCATCACAGCCCAGATAGATTTTGCCAATCGCATCATTTCTGCTCATTTTGTCATGATCCCACACTGAGATGACCAGCTGGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384771 False 2649 lncRNA 0.36 1 592734 595382
TU384773 False 964 lncRNA 0.36 1 592734 593697
TU384776 True 433 lncRNA 0.41 1 595910 596342

Neighbor

gene id symbol gene type direction distance location
CI01000120_00477162_00480891 NA coding upstream 111609 476999 ~ 481125 (+)
CI01000120_00459245_00460500 MYOD1, MYOD2, MYOD1C coding upstream 131691 459027 ~ 461043 (+)
CI01000120_00451804_00456525 NA coding upstream 134960 449530 ~ 457774 (+)
CI01000120_00322439_00323110 NA coding upstream 269522 322347 ~ 323212 (+)
CI01000120_00308876_00311801 NA coding upstream 280834 308688 ~ 311900 (+)
CI01000120_00612213_00613803 NA coding downstream 15871 612213 ~ 614230 (+)
CI01000120_00639875_00643491 RASK, KRAS coding downstream 42709 639051 ~ 643520 (+)
CI01000120_00704598_00707678 NA coding downstream 107945 704287 ~ 708495 (+)
CI01000120_00731213_00760512 NA coding downstream 134638 730936 ~ 760760 (+)
CI01000120_01093808_01118807 NA coding downstream 497466 1093808 ~ 1118807 (+)
G338290 NA non-coding upstream 7517 584989 ~ 585217 (+)
G338288 NA non-coding upstream 9260 582806 ~ 583474 (+)
G338289 NA non-coding upstream 10539 581990 ~ 582195 (+)
G338219 NA non-coding upstream 25342 561956 ~ 567392 (+)
G338283 NA non-coding upstream 33044 559452 ~ 559690 (+)
G338119 NA non-coding downstream 2968 599310 ~ 599848 (+)
G338296 NA non-coding downstream 7153 603495 ~ 603747 (+)
G338298 NA non-coding downstream 8148 604490 ~ 604903 (+)
G338300 NA non-coding downstream 12791 609133 ~ 609358 (+)
G338319 NA non-coding downstream 74451 670793 ~ 671203 (+)
G338386 NA other downstream 166935 763277 ~ 763643 (+)
G338458 NA other downstream 268216 864558 ~ 865315 (+)
G338464 NA other downstream 282469 878811 ~ 879593 (+)
G338508 NA other downstream 410723 1007065 ~ 1009403 (+)
CI01000120_01141788_01144915 DYNLRB2, DYNLRB2.L other downstream 543498 1141788 ~ 1145086 (+)

Expression


Co-expression Network