XLOC_011367


Basic Information

Item Value
gene id XLOC_011367
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20173818 ~ 20189395 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022647
TCTTCTGCAGGTACATTCATTCACTATGCAGTCTGCTCAATAGACTCACTAAACAAAAGCTCGGCGACACTGAATCTAACGGCCCGAGTCAAGGGGAGGAAACATCTCATCCACGGAAGTTAGATAAACTTTCTATGTATTTTAAATTCTCACATAAAGTAGGTCAAAGTCCAGTCGTGCTGGTAACCCGTGCTCAGCTACTCGTGACAGACATTGAACTGCCTTATGTCCGTTAACGGAATCGCGTGATGACCAAGCAATGAGAAAACATGACATATGGCAGCGCTTTTTGTGTTAATGGCGGCTTGAAGATTACACCGAGCAATAATAATGGTCATTTTACATTCATCCCCCAGCCCCTAATGTTGTAAAGGGGTTAAAAATCTAAAACCTCACTGGTCCACAGGTGTGTGGACCACCAGTATGGACCCCTGGCAAAATCTAGTGTCCAGATGtaCGGCATGGTGGCAGATGCACACGCCGCATGCTCTGAGAGCTTGTGTGTATGAAGTGTGTAAACCACTGGTGCCGCTCCTGCTGTGCATCACGGCCCTGGTGGCTGTGATTGTGTATGCGCTGGCCGATAATCTACACAGCTTTGTAAGCAGGATCTTCATTCCCCAGTATCACTATCCTTTTGCGGTGCCAATTGCATTCATACAGGTATTTCTAAATCTGCTGGCACTGCTAGCTTTGCACGGTGTGGGTCTGATCCACCTCAAGCCTTTCTCCCTGAGGCTGGCAGAGCGTTTGTTTGTGCCAGCGGTCTGCGGGAGCGTTCAGTGTGTTTTGGCTGTATGGGCTGAAGCCTGTACTCACTCTGGCCTGTTCCCGCTGATTGCCCGGTTCCTCCCGATGGTCAGCGTGAGCTTGGGTCACCTGTTTGCTCTGAGTATTCCAGGCTCCATCCCTGTGTCCTGCTTTCTCACTGTGCTCACTGTCTCCTCCGTCAGCGTCACAGTGTATAAAGGACTGTATGCGATGGAGCCGCTGGAGTTTGTGTATTCTCCGCTCAGCCTGATCCTCCACAGCATCTCTCTGGCCTGGTTAGCTAAAGTGGCCCAAACGGAGCGAAGCAACGCCTCAACCTTTGACCTCTACTACACTCTAACAGTGACCCGAACCCTCTTATTAGGGTTCCTATGTGTTCTGCACCCCGATGGCCCGAAGGCACTGAGTCAGGGCAACTGGCACAGTCTGCTGTTTTGGGGATACATGCTTGGGATGTTGCTGCTTGGTGCCGTGCAGCTTCTTTTTGTGGATGTAACGGCGCTGTATTTTTCTGCTCTCCCTGCAGCTGTTCTGCATGCGACCCGGGGCCTGGTTCTGCCCTTGTTCAGCCTGCTATAGGACAGACGGGTCAATCAGAATGTAGATCATTCTGAGGAAAAACATGCAGTAATTAACTTAACACCCAAGAacagtattaatttaatttataagcaTGATAACTTCATGTAAAGATCATAATCATTAACAGATTCATTTATATGGTTATACACTGATGTGAAATTCATCTCTCCACTTGCACTGAAACTATGACACATTACATCCTACAAACAGTGTGTTTTATGAAGGAACTTGATTTAAAGTTCTAGAATTAAATGGTAAAGGTTAAAGACAGCGTTCCCAAGTATTTCACTATAATATTTTGCAGTAGAATTCCACATTATTGTCAGCTGGACGCTCAGAGAATTAAAGTATGACATTTCTATTTTGCATTAACAAAATCTAAAAACCCTTTTTAGGACCTTACTGGTTTTAAATTGTATCAGTTTCACAATTTGTGTTACAGCAATGCTAAAATGATAGTTGAATTTGTTTGTTCtgggtttaatttaaaaaataatagagCCTATGATTTGCATGATCTGGAAAGCGCAGCTGGAACTGCAGAATCCAGTCATGAAATCTATCATGTGGAATGTTGTGGCAAATTTTGGATTAATCAAAAGCAGTGTTGTGCACCGAATCAAATCATTATgcgaataaaatatatatacagaaaaTAAAGTGATATAGGGACtttacacttactggccactttattaggtacaactgctcgttaacgaaactttttaatcagccaatcacatggcaatgcatttagacatgtagacccgcaaatgccttgttattgccagaggtcagtggagaatggccaggctggttccagctgattgaaagacaacagtaacgcaaataaccactcgttataaccgaggtatgcaaaagagcatctctgaacacacaacacatcgaaccttgaggcagatgcgctacagcagcagaagaccacatctgttgccactcctgtcagctaagaacaagaaaactgaggctacaattcgcacaggctcaccaaatttggacaatagaagattggaaaaacgttgcctggtctgatgagtctcaatttctgctacgAAATTTAGATGGtaggggtcagaatttggcatcaacaacatgaaaacatggatccatccagctttgtatcaacggtttaggctggtggcggtgtaatggtttgggggatattttcttgacacactttgggcccattcaaaccaattgagcatcgtgtcaacgccacagcctacctgagtgttgctgaccctgtccatccctttatgaccacagtgtactcatcttctcatggctacttccagtaggataatgcaccatgtcataaagcgcgaatcatctcagactggtttcttaaacatgacaatgagttcactgtactcaaatggcctccacagtcaccagactcaatccaatagagcagttttgagatgtggtgaaacaggagagtcacatcatggatgtgcagctgcgtgatgctatcaagtcaatatggctcaaaacctctgaggaatatttctagtaccttgttgaatctattccaaGAAGgcttgaggcagttctgaaggcaaaagggggttcaacccggtactagtaaggtgtacctgataaagtggccagtgagtgtatattgcagTACTGTGAATGGTGAAAGGTGCTGACTTGacacaaaaagaatttaaaataagctttatattaaatgcaaaatctatatttttgttttatattttgatggTGAAATATGATCTAAGCATGTTCTTGACATGTTTGTGAGCTTCACCGAGAGTATACTACAGAAAGACACTCGTCTTGCAATAAACTTATACAAGAGCCATTTTTTCCAATAAAATGTGTGCTCTGTAGAAACCACATCAATAATTTAACACTTTTACAAAAAGGATGTTATTTTAATAGAAAACCTATGACTTCTCTTTTTATTTAGCTCTCAATGTATGATACAAACTACAGTATTATTGTTAAAGTTGAGCAAATAAAACACTGATGAGGTTTTCTTGTGACC
>TCONS_00022648
TGTCCGTTAACGGAATCGCGTGATGACCAAGCAATGAGAAAACATGACATATGGCAGCGCTTTTTGTGTTAATGGCGGCTTGAAGATTACACCGAGCAATAATAATGGTGTGTGGACCACCAGTATGGACCCCTGGCAAAATCTAGTGTCCAGATGtaCGGCATGGTGGCAGATGCACACGCCGCATGCTCTGAGAGCTTGTGTGTATGAAGTGTGTAAACCACTGGTGCCGCTCCTGCTGTGCATCACGGCCCTGGTGGCTGTGATTGTGTATGCGCTGGCCGATAATCTACACAGCTTTGTATTTCTAAATCTGCTGGCACTGCTAGCTTTGCACGGTGTGGGTCTGATCCACCTCAAGCCTTTCTCCCTGAGGCTGGCAGAGCGTTTGTTTGTGCCAGCGGTCTGCGGGAGCGTTCAGTGTGTTTTGGCTGTATGGGCTGAAGCCTGTACTCACTCTGGCCTGTTCCCGCTGATTGCCCGGTTCCTCCCGATGGTCAGCGTGAGCTTGGGTCACCTGTTTGCTCTGAGTATTCCAGGCTCCATCCCTGTGTCCTGCTTTCTCACTG
>TCONS_00022649
TTTGGTTGACTAAACTATAcactattatattattttgagcttaattatgttttatatagTTTTGTATCATTTGATATTACATTCTGtgtcaaatatatacatttgtttactgtatgtgaaccaaaataactttttattttaattagacaAATTtctattttatcatttataatatttaatatttgttcaaTTGAATATTTCATAATATCTACTTTTTTCCTACAAAAAACATGCTTGACTTTGGTTTAGGCTACTTTGTATTTTGCACTAAGTacatctgagtgatctgttaaaTATTACAGGAGAAAACATGACATATGGCAGCGCTTTTTGTGTTAATGGCGGCTTGAAGATTACACCGAGCAATAATAATGGTCAGTAATTTTCATGGCACTCCACATATGCTGCTCTTTACTtatttataaatgtcttttataaTGAACACTTTTGTTCCTAATCCTAAACCTTTAGTCTTTTTTCATTCTTATTTATCTGTGACTTGTATTTGTGTTCAGGTCATTTTACATTCATCCCCCAGCCCCTAATGTTGTAAAGGGGTTAAAAATCTAAAACCTCACTGGTCCACAGGTGTGTGGACCACCAGTATGGACCCCTGGCAAAATCTAGTGTCCAGATGGTGAGAAACATTACTAATAAGCACAAAACTCAGTTGAATTGTGATTGTAAGTTGTTTACATCTTGCAAATCTCAACCATTAATGCTTGTGCCATTATACTACTTTATTTAAtaatcactgtgtgtgtgttttttagtaCGGCATGGTGGCAGATGCACACGCCGCATGCTCTGAGAGCTTGTGTGTATGAAGTGTGTAAACCACTGGTGCCGCTCCTGCTGTGCATCACGGCCCTGGTGGCTGTGATTGTGTATGCGCTGGCCGATAATCTACACAGCTTTGTAAGCAGGATCTTCATTCCCCAGTATCACTATCCTTTTGCGGTGCCAATTGCATTCATACAGGTATTTCTAAATCTGCTGGCACTGCTAGCTTTGCACGGTGTGGGTCTGATCCACCTCAAGCCTTTCTCCCTGAGGCTGGCAGAGCGTTTGTTTGTGCCAGCGGTCTGCGGGAGCGTTCAGTGTGTTTTGGCTGTATGGGCTGAAGCCTGTACTCACTCTGGCCTGTTCCCGCTGATTGCCCGGTTCCTCCCGATGGTCAGCGTGAGCTTGGGTCACCTGTTTGCTCTGAGTATTCCAGGCTCCATCCCTGTGTCCTGCTTTCTCACTGTGCTCACTGTCTCCTCCGTCAGCGTCACAGTGTATAAAGGACTGTATGCGATGGAGCCGCTGGAGTTTGTGTATTCTCCGCTCAGCCTGATCCTCCACAGCATCTCTCTGGCCTGGTTAGCTAAAGTGGCCCAAACGGAGCGAAGCAACGCCTCAACCTTTGACCTCTACTACACTCTAACAGTGACCCGAACCCTCTTATTAGGGTTCCTATGTGTTCTGCACCCCGATGGCCCGAAGGCACTGAGTCAGGGCAACTGGCACAGTCTGCTGTTTTGGGGATACATGCTTGGGATGTTGCTGCTTGGTGCCGTGCAGCTTCTTTTTGTGGATGTAACGGCGCTGTATTTTTCTGCTCTCCCTGCAGCTGTTCTGCATGCGACCCGGGGCCTGGTTCTGCCCTTGTTCAGCCTGCTATAG
>TCONS_00022650
AAACCACTGGTGCCGCTCCTGCTGTGCATCACGGCCCTGGTGGCTGTGATTGTGTATGCGCTGGCCGATAATCTACACAGCTTTGTAAGCAGGATCTTCATTCCCCAGTATCACTATCCTTTTGCGGTGCCAATTGCATTCATACAGGTATTTCTAAATCTGCTGGCACTGCTAGCTTTGCACGGTGTGGGTCTGATCCACCTCAAGCCTTTCTCCCTGAGGCTGGCAGAGCGTTTGTTTGTGCCAGCGGTCTGCGGGAGCGTTCAGTGTGTTTTGGCTGTATGGGCTGAAGCCTGTACTCACTCTGGCCTGTTCCCGCTGATTGCCCGGTTCCTCCCGATGGTCAGCGTGAGCTTGGGTCACCTGTTTGCTCTGAGTATTCCAGGCTCCATCCCTGTGTCCTGCTTTCTCACTGTGCTCACTGTCTCCTCCGTCAGCGTCACAGCTCCTGGTCCATTTCATCCATGTATTTCCTGAGATTGTCCAATGTCTCTGCACCGGTTGCCTGCTCCTGAGGGACACTGCTCTGCACTgcttca

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131126-33 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022647 False 3385 lncRNA 0.43 6 20173818 20186011
TCONS_00022648 False 569 mRNA 0.53 5 20174044 20179059
TCONS_00022649 False 1668 mRNA 0.43 3 20174812 20183976
TCONS_00022650 True 539 processed_transcript 0.54 3 20175646 20189395

Neighbor

gene id symbol gene type direction distance location
XLOC_011366 rgs7a coding upstream 424639 19626479 ~ 19749179 (+)
XLOC_011365 NA coding upstream 559553 19606920 ~ 19614265 (+)
XLOC_011364 CU571091.1 coding upstream 641999 19513571 ~ 19531819 (+)
XLOC_011363 slc22a15 coding upstream 662612 19499157 ~ 19511206 (+)
XLOC_011362 kif11 coding upstream 676812 19481049 ~ 19497006 (+)
XLOC_011368 gnrh3 coding downstream 14727 20204122 ~ 20207376 (+)
XLOC_011369 smndc1 coding downstream 48332 20237727 ~ 20243962 (+)
XLOC_011370 NA coding downstream 62066 20251461 ~ 20437298 (+)
XLOC_011371 neurl1ab coding downstream 310834 20500229 ~ 20518626 (+)
XLOC_011372 zgc:162183 coding downstream 380411 20569806 ~ 20592958 (+)
XLOC_011361 NA non-coding upstream 866412 19307062 ~ 19307406 (+)
XLOC_011360 NA non-coding upstream 873646 19208475 ~ 19300172 (+)
XLOC_011359 NA non-coding upstream 1153785 19017530 ~ 19020033 (+)
XLOC_011376 NA non-coding downstream 528581 20717976 ~ 20725895 (+)
XLOC_011377 NA non-coding downstream 678915 20868310 ~ 20868536 (+)
XLOC_011379 NA non-coding downstream 748859 20938254 ~ 20940831 (+)
XLOC_011380 NA non-coding downstream 789857 20979252 ~ 20986376 (+)
XLOC_011358 NA non-coding upstream 904439 18898695 ~ 19269379 (+)

Expression


Co-expression Network