XLOC_011368 (gnrh3)


Basic Information

Item Value
gene id XLOC_011368
gene name gnrh3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20204122 ~ 20207376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022651
ATCTTGAACAAACACAGCAGTTTTAGCATGGAGTGGAAAGGAAGGTTGCTGGTCCAGTTGTTGCTGTTAGTTTGTGTGTTGGAGGTCAGTCTTTGCCAGCACTGGTCATACGGTTGGCTTCCCGGTGGAAAAAGAAGCGTTGGTGAAATGGAGGCAACATTCAGGATGTTGGATCCTGGTGACACAGTGCTGTCTATTCCTGCTGATTCTCCAATGGAGCAGCTTTCACCAATACACATAGTGAATGAGGTGGATGCTGAAGGTTTGCCTCTGAAAGGACAAAGATTTCCAGACAGACGGGGAAGagtgtaaaaatataaatgatgaagCTGATATGAGTATGAATTTTATTCCATAGgagagcatgtttttggactcCTAATGAAATATCCTCCAAATTATGGATTTAATAAATACACTTCACTGAAGGAACAGATGGGCTGT
>TCONS_00022652
TTgtgctgtttgtttgtgtttgtgtgatttttttttacagatacaaATAAACAAGTGATTTCTGTGTTTTAGTTTTAGCATGGAGTGGAAAGGAAGGTTGCTGGTCCAGTTGTTGCTGTTAGTTTGTGTGTTGGAGGTCAGTCTTTGCCAGCACTGGTCATACGGTTGGCTTCCCGGTGGAAAAAGAAGCGTTGGTGAAATGGAGGCAACATTCAGGATGTTGGATCCTGGTGACACAGTGCTGTCTATTCCTGCTGATTCTCCAATGGAGCAGCTTTCACCAATACACATAGTGAATGAGGTGGATGCTGAAGGTTTGCCTCTGAAAGGACAAAGATTTCCAGACAGACGGGGAAGagtgtaaaaatataaatgatgaagCTGATATGAGTATGAATTTTATTCCATAGgagagcatgtttttggactcCTAATGAAATATCCTCCAAATTATGGATTTAATAAATACACTTCACTGAAGGAACAGATGGGCTGTAAATGTGTAGTatgtctagtttttttttttctctaaatgaacacaaatgcatttattatcagatattaaatgtg

Function

symbol description
gnrh3 Predicted to enable gonadotropin hormone-releasing hormone activity and gonadotropin-releasing hormone receptor binding activity. Acts upstream of or within brain development and camera-type eye development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; gonad; male organism; nervous system; and olfactory region. Human ortholog(s) of this gene implicated in breast cancer; hypogonadotropic hypogonadism 12 with or without anosmia; and periodontitis. Orthologous to human GNRH1 (gonadotropin releasing hormone 1).

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0031530 gonadotropin-releasing hormone receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0005183 gonadotropin hormone-releasing hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030724-4 Predicted to enable gonadotropin hormone-releasing hormone activity and gonadotropin-releasing hormone receptor binding activity. Acts upstream of or within brain development and camera-type eye development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; gonad; male organism; nervous system; and olfactory region. Human ortholog(s) of this gene implicated in breast cancer; hypogonadotropic hypogonadism 12 with or without anosmia; and periodontitis. Orthologous to human GNRH1 (gonadotropin releasing hormone 1).

Ensembl:

ensembl_id ENSDARG00000056214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022651 False 444 mRNA 0.43 4 20204122 20207302
TCONS_00022652 True 570 mRNA 0.38 3 20205185 20207376

Neighbor

gene id symbol gene type direction distance location
XLOC_011367 NA coding upstream 14727 20173818 ~ 20189395 (+)
XLOC_011366 rgs7a coding upstream 454943 19626479 ~ 19749179 (+)
XLOC_011365 NA coding upstream 589857 19606920 ~ 19614265 (+)
XLOC_011364 CU571091.1 coding upstream 672303 19513571 ~ 19531819 (+)
XLOC_011363 slc22a15 coding upstream 692916 19499157 ~ 19511206 (+)
XLOC_011369 smndc1 coding downstream 30351 20237727 ~ 20243962 (+)
XLOC_011370 NA coding downstream 44085 20251461 ~ 20437298 (+)
XLOC_011371 neurl1ab coding downstream 292853 20500229 ~ 20518626 (+)
XLOC_011372 zgc:162183 coding downstream 362430 20569806 ~ 20592958 (+)
XLOC_011373 si:ch73-288o11.5 coding downstream 397637 20605013 ~ 20611312 (+)
XLOC_011361 NA non-coding upstream 896716 19307062 ~ 19307406 (+)
XLOC_011360 NA non-coding upstream 903950 19208475 ~ 19300172 (+)
XLOC_011376 NA non-coding downstream 510600 20717976 ~ 20725895 (+)
XLOC_011377 NA non-coding downstream 660934 20868310 ~ 20868536 (+)
XLOC_011379 NA non-coding downstream 730878 20938254 ~ 20940831 (+)
XLOC_011380 NA non-coding downstream 771876 20979252 ~ 20986376 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000106_02433834_02434397 GNRH2, GNRH3 coding CI01000106 null 2433266 ~ 2434437 (+)