XLOC_011374 (si:ch73-306e8.2)


Basic Information

Item Value
gene id XLOC_011374
gene name si:ch73-306e8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20616016 ~ 20630315 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022664
CAGATATCATATTGACACTGATGTACAAAAGCATGTGAGCACTGGTTATGGAATCTCATTATTTTAAGCTCGTTTTACCACCAATAAGAAAGATGCTGTAAGGATGCAATTGGGTGAAAAATGTGTCAGTCTCATTTCTTATTCCAACTCTACTATATAAGGTGTTTAATAAGAGTCTGGGAAACATTTCTGGCATTTATATTGATCTTCTAGTGGCTCACCATGTCTCTTCACAATATGCTGAGAGTGATGATGTTGCTTACAGCAATATCATGCTGTAATGCTAAATCCATCAGAGTTAGCCACACAATTCATAGTAGAGACATTTATGAAgtACCTGGAATTGAGTACATGTCTGACAGTGAACTGAGACCAAAGTCTAAGATCAACTTCATGTCTGACAGTGAACAacAAAGCTCTAACATCAACTTCATGTCTGACAGTGAACAacaAAGCTCTAACATCAACTTCATGTCTGACAGTGAACAGTAAGTCCTTCTAAAATGAACAGTTTACATTTCATTAAGAGAGAAATACAGTAAGAATTAGACAGTGATGCTTGTTTAGTAGTTAAAATTGGTTCTTATGATTGATCCTCATTCAAAAATGACAAAGGGCAGTTATTACTATGCAATGTATTCTGTACATTTGCTTTTGTGTGTATGTTGTAGACAAAGCTCTAGCATCAACTTCATGTCTGAAAGTGAACACTCTGGAAGTGGTGATGTGTCTTCTTCTGAAAAGGAGGACGTATCTGAAATCAGTGATTCGGATGGAGTGTTGGAAAATAACCAAGTCACTGCAAACTATGACCCCAATGGATCGACTAACAATGATTACATCCCTCAAGACTACGGCCAattttacCATGATGACAACAATGGTCAAAATGATTCTGATGGCTCTGGAGCTGAACCACAAGAAGAAAACCAGTAACATCAAGAGATATCAAATAAAAGAAAGTTCTCCAATAAAAAACAGGATGAGGCTGTTAGTGTTGTTTGCAGCAGTGGCTTACTGTTATGCCTGCAGATGGGAAACATTTTCTGAAGACCACACTAACAACCCACAAAGTGATGCTATTATATAAACCTAAATCTATGCTCAtatgtttgttaattaaaaaaaaaaaaagttaattttgttAGTAGCTGAAAATGACAAATAACCTTATTATTCACTGTGTATCTTCAGTTTATACAGTTTGGTTTTTAATTCGTTAGACTATTTTATGGTGTTATGACTACTTTTACAGTGATCAATCAAATGTTTCAAGAAGGGTTGCACAATATTGGACAAAttttacattgcaatatttatttctttgcaatatttatattgcaatatcaaTCCAATTTccccagatgacttaaatagctctgTTTGCATAGAAATTACTTGATTGGGATGATAGGATAATGCTTTATGCTTTAAACCATGCTTTATAGTTTTCTGGATGGAGTAACAGTACTCAAGTACagtaattgaatttaaaataacgcTGCATAgtcatataaataaatcaataaaatcaatcattattaaacttctttatgcACTACTAACATGCTTTAAAGAATCTGAAAATGCTTAAGACTTTCACATGCCTTAAAAACATGATAAacaataaactttcactctattatggttcaGTTTTGCAGTGTAttcacaaatctcatgtgttatggtttctaaacatttataatc
>TCONS_00022665
GAAACATTTCTGGCATTTATATTGATCTTCTAGTGGCTCACCATGTCTCTTCACAATATGCTGAGAGTGATGATGTTGCTTACAGCAATATCATGCTGTAATGCTAAATCCATCAGAGTTAGCCACACAATTCATAGTAGAGACATTTATGAAgtACCTGGAATTGAGTACATGTCTGACAGTGAACTGAGACCAAAGTCTAAGATCAACTTCATGTCTGACAGTGAACAacAAAGCTCTAACATCAACTTCATGTCTGACAGTGAACAacaAAGCTCTAACATCAACTTCATGTCTGACAGTGAACACTCTGGAAGTGGTGATGTGTCTTCTTCTGAAAAGGAGGACGTATCTGAAATCAGTGATTCGGATGGAGTGTTGGAAAATAACCAAGTCACTGCAAACTATGACCCCAATGGATCGACTAACAATGATTACATCCCTCAAGACTACGGCCAattttacCATGATGACAACAATGGTCAAAATGATTCTGATGGCTCTGGAGCTGAACCACAAGAAGAAAACCAGTAACATCAAGAGATATCAAATAAAAGAAAGTTCTCCAATAAAAAACAGGGTAATCCTGCagatttaaacagcattttaaataaaaatgccttaa
>TCONS_00022666
ACATTTCTGGCATTTATATTGATCTTCTAGTGGCTCACCATGTCTCTTCACAATATGCTGAGAGTGATGATGTTGCTTACAGCAATATCATGCTGTAATGCTAAATCCATCAGAGTTAGCCACACAATTCATAGTAGAGACATTTATGAAgtACCTGGAATTGAGTACATGTCTGACAGTGAACTGAGACCAAAGTCTAAGATCAACTTCATGTCTGACAGTGAACAacAAAGCTCTAACATCAACTTCATGTCTGACAGTGAACAacaAAGCTCTAACATCAACTTCATGTCTGACAGTGAACAGTAAACAAAGCTCTAGCATCAACTTCATGTCTGAAAGTGAACACTCTGGAAGTGGTGATGTGTCTTCTTCTGAAAAGGAGGACGTATCTGAAATCAGTGATTCGGATGGAGTGTTGGAAAATAACCAAGTCACTGCAAACTATGACCCCAATGGATCGACTAACAATGATTACATCCCTCAAGACTACGGCCAattttacCATGATGACAACAATGGTCAAAATGATTCTGATGGCTCTGGAGCTGAACCACAAGAAGAAAACCAGTAACATCAAGAGATATCAAATAAAAGAAAGTTCTCCAATAAAAAACAGGGTAATCCTGCagatttaaacagcattttaaataaaaatgccttaaa
>TCONS_00022667
GCTGAGAGTGATGATGTTGCTTACAGCAATATCATGCTGTAATGCTAAATCCATCAGAGTTAGCCACACAATTCATAGTAGAGACATTTATGAAgtACCTGGAATTGAGTACATGTCTGACAGTGAACTGAGACCAAAGTCTAAGATCAACTTCATGTCTGACAGTGAACAacAAAGCTCTAACATCAACTTCATGTCTGACAGTGAACACTCTGGAAGTGGTGATGTGTCTTCTTCTGAAAAGGAGGACGTATCTGAAATCAGTGATTCGGATGGAGTGTTGGAAAATAACCAAGTCACTGCAAACTATGACCCCAATGGATCGACTAACAATGATTACATCCCTCAAGACTACGGCCAattttacCATGATGACAACAATGGTCAAAATGATTCTGATGGCTCTGGAGCTGAACCACAAGAAGAAAACCAGTAACATCAAGAGATATCAAATAAAAGAAAGTTCTCCAATAAAAAACAGGGTAATCCTGCagatttaaacagcattttaaataaaaatgccttaaagtatg
>TCONS_00022668
TCAAGACCGTTCTTGTACAATGcttcttgtgttttatttaacagtCTTGTATTCCTCACCACAACACGATGAGGCTGTTAGTGTTGTTTGCAGCAGTGGCTTACTGTTATGCCTGCAGATGGGAAACATTTTCTGAAGACCACACTAACAACCCACAAAGTTGTTCTGACTCTGACGGAAATCTCCATGAATTTAACTCTGAATGGGAGAACGGACCTGATACCTGTGTCTGTGTTAATTTTAGAATCATCTGTTGTGAAAGGACATGGGAGACATTTGGGACCCCTGCCCCAACTAAGCCCACCACAATCATCGGTGATTATTTTGAAGATTTATATGGCGACCACAACCCCGGCGCTGACAACACTGAAGGATCAGGAGGTGAAGCACAAGAAAAGTAAACTTgtgaacaataaacaaataaccaGCAGGTTTGATGAGctgattttaattgcatttaaataaacaGACCTAAGAGCATGCATCTGTGCATTTCTAGAATGTGtgtcaatataaaatgtaaaacaataaatgcGTTTCCATCTTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-409 No description available

Ensembl:

ensembl_id ENSDARG00000097416

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022664 False 1707 nonsense_mediated_decay 0.34 11 20616016 20626819
TCONS_00022665 False 625 mRNA 0.38 10 20616196 20620944
TCONS_00022666 False 666 nonsense_mediated_decay 0.38 11 20616199 20620945
TCONS_00022667 False 533 mRNA 0.38 8 20616576 20620950
TCONS_00022668 True 547 processed_transcript 0.40 5 20625773 20630315

Neighbor

gene id symbol gene type direction distance location
XLOC_011373 si:ch73-288o11.5 coding upstream 4704 20605013 ~ 20611312 (+)
XLOC_011372 zgc:162183 coding upstream 23058 20569806 ~ 20592958 (+)
XLOC_011371 neurl1ab coding upstream 97390 20500229 ~ 20518626 (+)
XLOC_011370 NA coding upstream 178718 20251461 ~ 20437298 (+)
XLOC_011369 smndc1 coding upstream 372054 20237727 ~ 20243962 (+)
XLOC_011375 npy4r coding downstream 8865 20639180 ~ 20640505 (+)
XLOC_011376 NA coding downstream 87661 20717976 ~ 20725895 (+)
XLOC_011377 NA coding downstream 237995 20868310 ~ 20868536 (+)
XLOC_011378 cdk1 coding downstream 293376 20923691 ~ 20929461 (+)
XLOC_011379 NA coding downstream 307939 20938254 ~ 20940831 (+)
XLOC_011367 NA non-coding upstream 426621 20173818 ~ 20189395 (+)
XLOC_011365 NA non-coding upstream 1001751 19606920 ~ 19614265 (+)
XLOC_011364 CU571091.1 non-coding upstream 1084197 19513571 ~ 19531819 (+)
XLOC_011361 NA non-coding upstream 1308610 19307062 ~ 19307406 (+)
XLOC_011380 NA non-coding downstream 348937 20979252 ~ 20986376 (+)
XLOC_011381 NA non-coding downstream 459459 21089774 ~ 21090112 (+)

Expression


Co-expression Network