XLOC_011383 (pygb)


Basic Information

Item Value
gene id XLOC_011383
gene name pygb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21126495 ~ 21152173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022672
GTGTAAAGTCCTCGCGCACACTCGCAACAACCTGTGCACATCAAGTCAAGGGTCCAAACTTTCATTCCTTTGTTTTTGACAACATGTCTAAACCGCTAACCGACCATGAAAGGCGCAAGCAGATCAGTGTTCGTGGTATAGCAGGACTCGGGGATGTTGCTGAAATCAAAAAGAGCTTCAACAGGCATCTGCACTTCACTCTTGTGAAGGACCGCAATGTGGCGACCCCGCGGGATTATTACTTCGCCCTGGCGCACACCGTGCGGGATCACCTGGTGGGCCGCTGGATCCGCACTCAGCAGTATTACTATGAGAAAGACCCGAAGCGCATCCACTATCTGTCACTTGAGTTTTACATGGGCAGAACTCTACAAAACACCATGATAAACCTTGGGCTACAGAATACCTGTGATGAAGCCATCTATCAGCTTGGACTTGATTTGGAAGAACTGGAGGAAATTGAGGAGGATGCAGGATTGGGAAACGGTGGTCTAGGGCGTCTTGCAGCTTGTTTTCTGGACTCAATGGCATCTCTGGGTTTGGCAGCGTATGGTTATGGCATTCGGTATGAGTTTGGCATCTTCAATCAGAAAATTGCCCATGGCTGGCAGATTGAGGAAGCTGATGATTGGCTGCGTTATGGTAACCCTTGGGAAAAGGCCCGTCCTGAGTACATGCTGCCTGTGCATTTCTATGGGCGAGTGGAACACACACATGACGGACCAAAATGGGTTGACACTCAGGTTGTGCTTGCAATGCCTTATGACACTCCTGTGCCTGGTTATAAAAACAATACTGTGAATACTATGAGACTATGGTCTGCCAAAGCTCCTAATGATTTCAACCTGCAAGAATTTAATGTTGGCGATTACATCCAGGCAGTACTGGACCGCAACCTGGCTGAGAACATCTCACGGGTTCTCTACCCCAATGACAATtttttTGAGGGGAAGGAGCTGCGTTTAAAGCAGGAGTATTTTGTAGTGGCTGCTACTCTTCAGGACATCATCAGACGCTTCAAATCCTCAAAGTTTGGCTGCAGGGATCCTGTGCGCACTTCTTTTGAAACGTTTCATGAGAAGGTGGCGATCCAGCTTAATGACACCCATCCAGCTCTGGCCATTCCTGAACTCATGAGGATCCTCGTGGATATTGAGCACCTGGACTGGGAGAAGgCATGGGAAATCACCACCAAAACATGTGCATACACAAACCACACTGTGCTGCCTGAGGCTCTAGAGCGCTGGCCTGTCTACATGTTCGAGAAGCTTCTGCCACGACATCTGCAGATCGTCTACGAGATCAACCGGAGACACCTAGATAGGATCTCTGCGCTTTACCCAGGTGACACAGATCGTTTGCGCAGGATGTCTCTGATCGAGGAGGGCGACCCAAAGAGGATAAACATGGCTCACCTCTGTGTGGTCGGTTCTCACGCTGTCAATGGTGTGGCACGCATTCACTCTGACATTGTCAAGACTACTGTATTTAAGGACTTTTGTGACATTGAGCCAGAGAAGTTTCAAAACAAGACAAATGGTATCACACCTCGCCGATGGCTGCTGCTCTGCAACCCCGGCCTGGCAGATATCATCGCTGAGAAAATTGGTGAGGACTTCTTGACGGATCTTTTCCAGCTTAGAAAACTGCTGGACTTCATCAATGATGAAATGTTCATTCGGGACGTGGCCAAAGTTAAACAGGAAAACAAGCAGAAATTTGCAGCATATCTGGAGAACGAATACAATGTCAAGATAAATCCAGAGTCCATCTTTGACATCCAGGTCAAAAGAATCCATGAGTACAAGAGACAATTACTGAACTGCCTTCACATCATCACTCTATATAACCGCATAAAGAAAGAACCCAACAAGAAGTTTGTTCCCAGGACAGTGATGATTGGAGGAAAGGCAGCCCCAGGCTACCACATGGCCAAGATGATCATAAAGCTGATCACGTCAGTGGGAGAAGTGGTCAACCACGATCCGGTGGTTGGAGACAGACTCAAAGTCATTTTCCTGGAGAACTACAGAGTCTCTTTAGCAGAGAAGGTGGTTCCCGCCGCTGACCTGTCTGAGCAGATCTCCACTGCAGGAACCGAAGCCTCCGGCACTGGAAACATGAAGTTCATGCTGAACGGCGCTCTGACCATCGGCACGATGGACGGCGCTAATGTGGAGATGGCAGAGGAAGCTGGAGAAGAAAACCTGTTCATCTTCGGCATGAGAGTCCAGGATGTGGAGGACATGGACAAGAAAGGATATAATGCCAGGGAATATTATGAGCGTCTGCCTGAACTGAAACTGGTGATGGATCAAATCAGCTCTGGATTCTTCAGTCCCAAAGAGCCTGAGCTCTTCAAAGATGTTGTCAACATGCTCATGGATCATGACAGGTTCAAGGTGTTTGCAGATTACGAGTCCTATATCAGCTGTCAAGACAAAGTTAATGAACTTTACAAGAACCCAAAAGAATGGACCAAAAAGGTGATCCGGAACATTGCAGCATCGGGAAAGTTCTCCAGTGACCGTACGATCGCTGAATATGCGCGGGAGATCTGGGGTGTCGAGCCGTCTGACGTCAAGATCCCACCACCAAATGAACCACGCGAATAAAACCTTCCCTGAATTCCTGAGTCCAGCTCTGTCACTTTGAATCTCATCACACACAGAAAACTAACTCCATGTGCACCTAACATATTTCAAATCACTGTTATTCACATCTTCGTAATCGATTGTCTTTGTTTCCATTACTGCATATTTAATTAGCTGTTTATCTGAAACTACTCTATTGAAGCTGTTCAGACAGCATAGTCCAGCTTCAGTTTACAAACTTATTTAAGCAATATGTTTATGCATAT

Function

symbol description
pygb Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Orthologous to human PYGB (glycogen phosphorylase B).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0102499 SHG alpha-glucan phosphorylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0102250 linear malto-oligosaccharide phosphorylase activity molecular_function
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040928-2 Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Orthologous to human PYGB (glycogen phosphorylase B).

Ensembl:

ensembl_id ENSDARG00000002021

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022672 True 2860 mRNA 0.47 20 21126495 21152173

Neighbor

gene id symbol gene type direction distance location
XLOC_011382 entpd6 coding upstream 2920 21102301 ~ 21123575 (+)
XLOC_011381 NA coding upstream 36383 21089774 ~ 21090112 (+)
XLOC_011380 NA coding upstream 140119 20979252 ~ 20986376 (+)
XLOC_011379 NA coding upstream 185664 20938254 ~ 20940831 (+)
XLOC_011378 cdk1 coding upstream 197034 20923691 ~ 20929461 (+)
XLOC_011384 eno4 coding downstream 142959 21295132 ~ 21311413 (+)
XLOC_011385 pla2g4f.1 coding downstream 300085 21452258 ~ 21467430 (+)
XLOC_011386 pla2g4f.2 coding downstream 325719 21477892 ~ 21494295 (+)
XLOC_011387 chst15 coding downstream 362604 21514777 ~ 21563774 (+)
XLOC_011388 BX927351.1 coding downstream 412434 21564607 ~ 21607709 (+)
XLOC_011377 NA non-coding upstream 257959 20868310 ~ 20868536 (+)
XLOC_011376 NA non-coding upstream 400600 20717976 ~ 20725895 (+)
XLOC_011389 NA non-coding downstream 515624 21667797 ~ 21703491 (+)
XLOC_011392 AL773596.1 non-coding downstream 765275 21917448 ~ 21917564 (+)
XLOC_011395 NA non-coding downstream 917759 22069932 ~ 22071151 (+)
XLOC_011400 BX511245.1 non-coding downstream 1406882 22559055 ~ 22572656 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000312_00395776_00407820 PYGB, MGC80198, PYGM.L coding CI01000312 null 395776 ~ 407993 (+)
bowfin (Amia calva) AMCG00001769 NA coding CM030143.1 CM030143.1 15502070 ~ 15525306 (+)