XLOC_011391 (plekha1a)


Basic Information

Item Value
gene id XLOC_011391
gene name plekha1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21887823 ~ 21913328 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022686
GTGGTGACGTATGCAGCCACTTCCGCTCCTGCAGGAAAAACACCCGTGAAGTTTGTGAACGGGGACTCGAGCAGGAGGAGATGGGCTGAACCGAACCACTTCAGCGATAATAAACCGACCGTTTCTGATATCAGAAGGAGGTGGAATGAGTAGTGTGAAGACAGGGGGACATGCCTTACGTGGACCGGCAGAACCGCATCTGCGGTTTCCTGGACATCGAAGATGTGGAGAACAGCGGCAAGTTTCTGCGGCGCTATTTCATTCTGGACACACAGCAGGGTAGCCTGCTCTGGTATATGGACAACCCACAGAACCTGCCCGTTGGTGCCAagcatgtgggtttcctcagtcTCACCTACATATCCAAGGTCAGCGATGCCACCAAACAGAGGCCAAAAGCTGAGTACTGCTTTGTCATCAATGCAGGAATGAGGAAATACTTTCTGCAGGCTAATGATCAGCAGGATCTTGTGGAATGGGTCAATGCTCTCAACAATGCAACCAAAATCACAGTTCCCAAGTCCTCTGATTCAGTTCACTCTGAGAGTCAGAAGCTAACTTCAAATGGCAACAAGAAACAGGTCCCATATAAGACTGAAATCATTGCAGGAGTGGCTGTCGTCACACAGACACAGGATGGAGAGGTGGGACACAGTGTTGCAGGAGAGAAGTTGGGCTTGAGGAAGCCTCCGAACCGTCCGCCATATTTGCACACGAGAGCAGGGCAGGATCAGGCCGTTATTAAAGCAGGATACTGTGTCAAACAGGGGGCTCTGATGAAGAACTGGAAACGAAGATATTTTGTTTTGGAGCAGAACTCAATGAGTTACTTCAAGTCTGATCTGGAGAAGGAGCCATTGAGAATTATTCTTCTGAAGGAGGTCCATAAGGTACAGGAGTGTAAACACAGTGAAATAATGATGCGCGACAACCTCTTTGAAGTCGTCACAACCTCAAGAACATTTTTTGTCCAGGCTGATAGTCCCGAGGAGATGCACGGCTGGATTAAGGCTATTTCAGGAGCTATTGTGGCTCAGAGGGGCCAGGGCCGGTCTGCAGCCTCTGAGCACATTGTTGGCGGCTCCTGTTTCTACCGCCAGCACACGGGTTCAGTCATCCCCTGGACGGCCAGCCCTGCCGTGTCAGGTCACCCAGAACGCCATGGTCCCGCGAGGCCTGGCATGGGACAGCGAGCACTTCATGAGCCTGCTGCCCCTGCCCCGTCCACACGCCCGCCTGTCATTGCAAGAGACCCGCCTGTCCAAGTGACTCACGAATCGCCCTGGCGGAGACGCAGCAGCATGGGAATGTGCGACGCTCCTTTACCCCAACTTGATCTTGACAACGCAGATCTTCCCGTCAGTGAGGTCTGACTGTTTTATAGTAAACTTTTAACTCGGACAGAAATATCAAGGTGTGATAGGTCTTCAAAAACTGATCGGATTGAAAGAGCTCATGTTCGTTTTGATCAGGAACACTACATTAGATTGATTCAAACACCAAAGATTCTTCAAAGTACCCCCCAACCTTCTTTTTTGGCTAAATATCACCGACTGCATTGGAGGAAGTGAAGATTGACATGGATTGGGGTTGGAAAGTGTTTTTGAGACATGATTCCCTTTTAATATCTGAAAACTTTCCTTTACTGAGGATAACAGAACATGCTTTTTTTCTGTAcagtttttttaaggtttttctTTGTGCTCTAATTGTGACTAATTGATCCTGTGGACTAAGCCGGAGTTCATTTTAACTCCTCATTTGCCTTTActctacatacatacatatgggTGACTTCATGTAGTTGTAATATTTTTGTCTGTCATTTGCTCTGCTAACTGAGGAATCAAATTCACTTGTTATTTAATAACTCAGTGTGATTACGGTACTCAGTTGGATTACGGTAAAACCAAGCAGCTTGTAAAGATACTGTTTAATTGGTCcatgttcctgtcatttttctggcATCCTGATAAGACTATATGTGTCTGACCAGATGAGTGAGAGAGGTTGTTGTTGATGAATTGTTCATTTTGTGGTTTGAGTTGTTGGGATTTGCGTATGACTACTATGACAAAATGCTTTTCAGTGTAAGTTTATCTTCGCACTGATTCATCATTTTTGCCCTGTCTAAAAAAAAAGTGCCTCTCTTTTGCTTTCAAAGGTTTGGCGGTTTTAACCctcagttttgtttttgtgttgtaacCATTTTAatcttgtttgtttatattatttattataagaaAAAGCAATAAACCAAGTCTGAATTATTGCTGTTGATTGGATATATATTACACTTTCGCTCCCCATAGACAATTATTTAAATAGTTAAGCCCATAaaataaatctgtcatcatttactaggACTTGTGTACAGTAGATCCAAACACGAGAAATTCAAAtagacaaatgaaaataaatgaagtcTGCTCTCCCAAAGCGCTGATGTTTAAACAATAAAGAGATCAACAAATTCA
>TCONS_00022687
AAAACACCCGTGAAGTTTGTGAACGGGGACTCGAGCAGGAGGAGATGGGCTGAACCGAACCACTTCAGCGATAATAAACCGACCGTTTCTGATATCAGAAGGAGGTGGAATGAGTAGTGTGAAGACAGGGGGACATGCCTTACGTGGACCGGCAGAACCGCATCTGCGGTTTCCTGGACATCGAAGATGTGGAGAACAGCGGCAAGTTTCTGCGGCGCTATTTCATTCTGGACACACAGCAGGGTAGCCTGCTCTGGTATATGGACAACCCACAGAACCTGCCCGTTGGTGCCAagcatgtgggtttcctcagtcTCACCTACATATCCAAGGTCAGCGATGCCACCAAACAGAGGCCAAAAGCTGAGTACTGCTTTGTCATCAATGCAGGAATGAGGAAATACTTTCTGCAGGCTAATGATCAGCAGGATCTTGTGGAATGGGTCAATGCTCTCAACAATGCAACCAAAATCACAGTTCCCAAGTCCTCTGATTCAGTTCACTCTGAGAGTCAGAAGCTAACTTCAAATGGCAACAAGAAACAGGTCCCATATAAGACTGAAATCATTGCAGGAGTGGCTGTCGTCACACAGACACAGCAGGATGGAGAGGTGGGACACAGTGTTGCAGGAGAGAAGTTGGGCTTGAGGAAGCCTCCGAACCGTCCGCCATATTTGCACACGAGAGCAGGGCAGGATCAGGCCGTTATTAAAGCAGGATACTGTGTCAAACAGGGGGCTCTGATGAAGAACTGGAAACGAAGATATTTTGTTTTGGAGCAGAACTCAATGAGTTACTTCAAGTCTGATCTGGAGAAGGAGCCATTGAGAATTATTCTTCTGAAGGAGGTCCATAAGGTACAGGAGTGTAAACACAGTGAAATAATGATGCGCGACAACCTCTTTGAAGTCGTCACAACCTCAAGAACATTTTTTGTCCAGGCTGATAGTCCCGAGGAGATGCACGGCTGGATTAAGGCTATTTCAGGAGCTATTGTGGCTCAGAGGGGCCAGGGCCGGTCTGCAGCCTCTGAGCACATTGTTGGCGGCTCCTGTTTCTACCGCCAGCACACGGGTTCAGTCATCCCCTGGACGGCCAGCCCTGCCGTGTCAGGTCACCCAGAACGCCATGGTCCCGCGAGGCCTGGCATGGGACAGCGAGCACTTCATGAGCCTGCTGCCCCTGCCCCGTCCACACGCCCGCCTGTCATTGCAAGAGACCCGCCTGTCCAAGTGACTCACGAATCGCCCTGGCGGAGACGCAGCAGCATGGGAATGTGCGACGCTCCTTTACCCCAACTTGATCTTGACAACGCAGATCTTCCCGTCAGTGAGGTCTGACTGTTTTATAGTAAACTTTTAACTCGGACAGAAATATCAAGGTGTGATAGGTCTTCAAAAACTGATCGGATTGAAAGAGCTCATGTTCGTTTTGATCAGGAACACTACATTAGATTGATTCAAACACCAAAGATTCTTCAAAGTACCCCCCAACCTTCTTTTTTGGCTAAATATCACCGACTGCATTGGAGGAAGTGAAGATTGACATGGATTGGGGTTGGAAAGTGTTTTTGAGACATGATTCCCTTTTAATATCTGAAAACTTTCCTTTACTGAGGATAACAGAACATGCTTTTTTTCTGTAcagtttttttaaggtttttctTTGTGCTCTAATTGTGACTAATTGATCCTGTGGACTAAGCCGGAGTTCATTTTAACTCCTCATTTGCCTTTActctacatacatacatatgggTGACTTCATGTAGTTGTAATATTTTTGTCTGTCATTTGCTCTGCTAACTGAGGAATCAAATTCACTTGTTATTTAATAACTCAGTGTGATTACGGTACTCAGTTGGATTACGGTAAAACCAAGCAGCTTGTAAAGATACTGTTTAATTGGTCcatgttcctgtcatttttctggcATCCTGATAAGACTATATGTGTCTGACCAGATGAGTGAGAGAGGTTGTTGTTGATGAATTGTTCATTTTGTGGTTTGAGTTGTTGGGATTTGCGTATGACTACTATGACAAAATGCTTTTCAGTGTAAGTTTATCTTCGCACTGATTCATCATTTTTGCCCTGTCTAAAAAAAAAGTGCCTCTCTTTTGCTTTCAAAGGTTTGGCGGTTTTAACCctcagttttgtttttgtgttgtaacCATTTTAatcttgtttgtttatattatttattataagaaAAAGCAATAAACCAAGTCTGAATTATTGCTGTTGATTGGATATATATTACACTTTCGCTCCCCATAGACAATTATTTAAATAGTTAAGCCCATAaaataaatctgtcatcatttactaggACTTGTGTACAGTAGATCCAAACACGAGAAATTCAAAtagacaaatgaaaataaatgaagtcTGCTCTCCCAAAGCGCTGATGTTTAAACAATAAAGAGATCAACAAATTC
>TCONS_00022688
CTCTGATTCAGTTCACTCTGAGAGTCAGAAGCTAACTTCAAATGGCAACAAGAAACAGGTCCCATATAAGACTGAAATCATTGCAGGAGTGGCTGTCGTCACACAGACACAGGATGGAGAGGTGGGACACAGTGTTGCAGGAGAGAAGTTGGGCTTGAGGAAGCCTCCGAACCGTCCGCCATATTTGCACACGAGAGCAGGGCAGGATCAGGCCGTTATTAAAGCAGGATACTGTGTCAAACAGGGGGCTCTGATGAAGAACTGGAAACGAAGATATTTTGTTTTGGAGCAGAACTCAATGAGTTACTTCAAGTCTGATCTGGAGAAGGAGCCATTGAGAATTATTCTTCTGAAGGAGGTCCATAAGGTACAGGAGTGTAAACACAGTGAAATAATGATGCGCGACAACCTCTTTGAAGTCGTCACAACCTCAAGAACATTTTTTGTCCAGGCTGATAGTCCCGAGGAGATGCACGGCTGGATTAAGGCTATTTCAGGAGCTATTGTGGCTCAGAGGGGCCAGGGCCGGTCTGCAGCCTCTATGCGTCAGGCCAGAAGGCATTCGAGCCCCTGTATTCAGAGATACACACCACGTGTCACTCAAGGCAGCACGAGCACATTGTTGGCGGCTCCTGTTTCTACCGCCAGCACACGGGTTCAGTCATCCCCTGGACGGCCAGCCCTGCCGTGTCAGGTCACCCAGAACGCCATGGTCCCGCGAGGCCTGGCATGGGACAGCGAGCACTTCATGAGCCTGCTGCCCCTGCCCCGTCCACACGCCCGCCTGTCATTGCAAGAGACCCGCCTGTCCAAGTGACTCACGAATCGCCCTGGCGGAGACGCAGCAGCATGGGAATGTGCGACGCTCCTTTACCCCAACTTGATCTTGACAACGCAGATCTTCCCGTCAGTGAGGTCTGACTGTTTTATAGTAAACTTTTAACTCGGACAGAAATATCAAGGTGTGATAGGTCTTCAAAAACTGATCGGATTGAAAGAGCTCATGTTCGTTTTGATCAGGAACACTACATTAGATTGATTCAAACACCAAAGATTCTTCAAAGTACCCCCCAACCTTCTTTTTTGGCTAAATATCACCGACTGCATTGGAGGAAGTGAAGATTGACATGGATTGGGGTTGGAAAGTGTTTTTGAGACATGATTCCCTTTTAATATCTGAAAACTTTCCTTTACTGAGG

Function

symbol description
plekha1a Predicted to enable PDZ domain binding activity. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2780 Predicted to enable PDZ domain binding activity. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1).

Ensembl:

ensembl_id ENSDARG00000030064

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022686 False 2477 mRNA 0.44 12 21887823 21913328
TCONS_00022687 False 2443 mRNA 0.44 12 21887859 21913327
TCONS_00022688 True 1199 mRNA 0.50 8 21902058 21912502

Neighbor

gene id symbol gene type direction distance location
XLOC_011390 ikzf5 coding upstream 64983 21760032 ~ 21822840 (+)
XLOC_011389 NA coding upstream 184332 21667797 ~ 21703491 (+)
XLOC_011388 BX927351.1 coding upstream 280114 21564607 ~ 21607709 (+)
XLOC_011387 chst15 coding upstream 324049 21514777 ~ 21563774 (+)
XLOC_011386 pla2g4f.2 coding upstream 393528 21477892 ~ 21494295 (+)
XLOC_011392 AL773596.1 coding downstream 4120 21917448 ~ 21917564 (+)
XLOC_011393 htra1a coding downstream 5803 21919131 ~ 21959556 (+)
XLOC_011394 crip3 coding downstream 51144 21964472 ~ 21982835 (+)
XLOC_011395 NA coding downstream 156604 22069932 ~ 22071151 (+)
XLOC_011396 nphp1 coding downstream 159009 22072337 ~ 22091141 (+)
XLOC_011381 NA non-coding upstream 797711 21089774 ~ 21090112 (+)
XLOC_011380 NA non-coding upstream 901447 20979252 ~ 20986376 (+)
XLOC_011379 NA non-coding upstream 946992 20938254 ~ 20940831 (+)
XLOC_011400 BX511245.1 non-coding downstream 645727 22559055 ~ 22572656 (+)
XLOC_011404 dre-mir-456 non-coding downstream 913735 22827063 ~ 22827147 (+)
XLOC_011407 AL935174.6 non-coding downstream 1308849 23222177 ~ 23232294 (+)

Expression


Co-expression Network