CI01000127_00328606_00381628 (ZNF609A)


Basic Information

Item Value
gene id CI01000127_00328606_00381628
gene name ZNF609A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 328474 ~ 381628 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000127_00328606_00381628.mRNA
ATGTCCCTCAGTAGTGGCACTGCAGGCGGGAAAGGTGTGGACTCAAATGCGGTGGACACTTACGACAGCGGGGATGAGTGGGATATTGGTGTAGGCAACCTGATCATTGACCTCGACGCCGACTTAGAGAAAGACAAGCTTGAGATGTCTGGCACCAAGGACGGGGACGGAATGGCTACTGCCTCGAGCGCCGTAGCGGCATTGCCTGATAACATCAAGTTCATTAACCCGGTGCCTCCTCCACCGATCAAGGACAGCAAATCCAAAGCTAAGCGTAGCAAGAATTCCAAGGACAGTAGCAAGTCCTCAACCCCTGACGGGGCCAAGAAGGACGCCCAGGGACGGACTCAAAATGAGGGCGCTGGGCCAACCGCTGGAAGCGGTCCCACGACCTTACCTACGGGGAAAGGTTCTGATAAAAGTAACAAGGCCTCCCGTAATGTTCAGAGTGGAAAAAAGGACAAGGAGGGTTCTGGGAAAAGCAAGAAGGAGAAAAATGAAGGGGTACAAGCTGGGAATGTGCCCTCGGAAAAGGACCCATCGGCCCAGGTTATGCCTTTAGGCCAGGCACGCAATACCCCATTTGAGGGGACGCAAAATTCGGACCTTGGTGGTGCTGATCAACTAGGGAATATTACCCTTGATACCACTGGAATAGTCACACCTTTGGCTATCAAGAGCGAACCAGAAGAAGTGGAAAATAATGACTGCAGGAGCATGAAGAAAGTAAAAAGTGAGAAGATGGAGTCTCCGGTGTCCACGCCGGCACCACCACCGCTCCACCTCCTCGCACCTGTTGGCAACAGCGACATCTCCTCCTCGTGTGAGCAGATCATGGTCCGCACGCGCTCCGTGGCCGTCAACACCTCTGATGTGGCTCTGGCGACCGAGCCCGAATGTCTGGGTCCTTGTGAACCTGGAACCAGCGTCAACCTGGAGGGCATCGTCTGGCAGGAAACGGAGGACGGTATGCTGGTTGTAAATGTCACCTGGAGGAACAAGACGTATGTGGGCACCCTTTTAGACTGCACTCGACATGACTGGGCACCCCCACGGTTCTGTGAGTCACCCACAAGTGACCTGGAGATGAGGAATGGCCGTGGACGGGGTAAAAGAATGAGGCCCAATAGCAATACGCCAGTCAATGAAAATAGTAATTCTTCTGATAACAAAGGCAGCAACAACAGCAAGACTCGAGCAGCATCAAACAGCAAAGGACGGCGGGGCAGTCAGAATTCCTCTGAGCGGCGCACCCCACCAAACAGCAACCCTGAGGATATAAAGGCTAGTCCATCATCTGCTAACAAACGTAAGAACAAACCTGCCTCGGACATGGAGCCCAATTCTAGTTCAGAGGACACTAAGGGTAGCAAACGAATGCGCACCAATTCAAATAGTGGAATACCTCATACTATTCTTCCCCTGTCCAACATCAAAGCTGAATCCTTGCCCCCTTCTTTGGACCGCAACTGCCCCTCACCGGTTCTCATTGATTGCCCTCATCCCAACTGCAACAAGAAGTACAAGCACATTAATGGTCTTAAATATCACCAGGCTCGTGCTCACAATGATGATGATATCAAGCTGGACATAGATGGTGATAGTGAGTATGGTGAGGACTCTACTTTGCACCCTGAGTCAGGCAGTTGCAATGGTGCATCCATTTCCCAGAAGGGCTGTGCATCTCCTGCGCGGTCGAACACACCCAAAGGCAGAGGATTTGATGCCCAGAGCCCATCACCGTCATCAGGAAAGTTTATCTCCAAGCAGCCTGGAAAGAAGAAACCAGAGACTGAGCATGACACTGGTGTGCCTATGGATGGCTGTGAGGATGGCCCATGTCTTACAGATGAGACGAGCAATGATGGCATTGATGATAAAAGAGGCTTGGACAAAGCTAAGAAGTCTGGCAGTAGTACCAAGGCAGACAAGCTTGCTCAGAAGGCAATGAAGTCAGCAAGGCCCCTGGTTCCTTCCTTACCTCCACAGCAGTTGTACACCTTACCAACTTCTGGCTTCCCTGCCCCCAATTCTGGCTCCTCCTCCAGTATGGGCTCTGTGGTCCAGTCCATTAGCAAGAGCCCCCAACTAAAATCCATTCAACCCAAACCTGCAGTAATGGGAGATCCCTCAATGAACCCAGTCTTGAGCAGTTCTAAAGACAAGAAAAAGAAAGATAAGAAAAAGAAGGAGGGTAGTAAGGAAGGAGACAGTCCAAAAGCCCCTTCCAAAGGAGGGAAACCTGAAGAAGGTAAGAGCCCATATTCCGAAAGCTCAGACCAAGGCAGCAAGAGTGAGGGGCTATTGAATGGATCTACGGATCCGCATCAAAGTCGGCTAGCCAGCATGAAAGCAGAGGCGGACAAAATCTACAGCTTTTCTGACAATTCTCCCAGTCCTTCTATTGGTGTGGCTAGTCGGATAGAAAGTGGGGGGATGGCACAGCCTCTTACTCCAATTCACGTGGTTACCCAAAATGGGGCAGATAACTCTTCTGTGAAGACCAACAGCCCGGCATACTCTGATATCTCTGATGCAGGGGAGGATGGAGAGGGCAAAGTGGATGGTATGAAGGTCAAGTCTGAGGATCAGGCAGTTCGGGAAAGTGCCAAGAAATCTCTGTTCCCATCCCAACCACCAAACAAAGACTCCTCTTATTACCCAGGTTACGAAACATACTACTCGCCCAATTATGGCAACCCAAACCCCAGTCCAGGAGTCTCTAACACTGCCACATCATTGCAAGACGGTGCAGTGAAGGTGAAAAAAGAGGAGGACCCGGAACCAGGGAATGAAAAGGGCAAATCAGAGCCGCCTGAAGAACGAAAGCCAGACATAGGTGCATCCTCTCAGCAGCAACAGCAGCCTTCGGTCATTCAGCAGCGTTCTAGCATGTTCATGCAGCCCCTCTACTACAATCAGTATGCTTATGTACCTCCCTTTGGCTATTCACCAGATCAGGCCTACCATAACCACCTGATGAACACAAGCCCAGCTTACAGGCAGCAGTGTGAGGACCGACAACGACAAGCAGCTGAGCAGCATCGTGCTGCAGAGAAGAAATCAGAGGCTGCTCAGAAGGACAGGGAAGCCTCCATTAAGTCAGAAGAATGGAAGCAGAAAGCTTCAGTTCCTCCAACATTGTCTAAGGCTCCAAGCCTCTCAGACTTGGGCAAGCCATCCCCACAGGGCAAGCCCAAAGATCCCTCAGAGCCTGGCAAGTCAGTCATTATCCCCAAAGGGGAAGATGGCAAGGGACAGACCCAGCAAAGTGAGGGTTTGAAAATGAAGCTAAGTGAAGCTGGCCATCATACAAAGGATGAACAGAAACCAGGCCTCGAGCCTGGGAGATCGGCTATGGAGCAGGCAATGTACATGTATAGACAGGTATGGAACTTAAGATGCCTTGAGCATTGCTTAAACATTATTTTGGTATCTTTCTACGATACATTTTTTCACGGTTTTAACCTTTGTGGCTTTCTAGAGAAATGTAAAGCTCTTGAGAACGAAAGGCCGCGTCCTAAAGACACTCCCTCTAAAGAGGAAAACAAGGAAGTGGCAGAACCACGAACTTCATCAGCCTCAGAGGAGCATAGAGGAGTTAGCAAAGATCCACGAGCACATATGCAGTTTTCCTCACCTCTGCAGCAGCACCAGTCATATATGTCTTATATGCACGGATACCCCTATGGCCAGGGTTATGACCCCAGCCATCCGGGATACAGGGGGATGCCTACTGTCATGATGAATTACCCTGGATCATACCTGTCGCCAGGGTACTCTTTTTCTCCATATGGCAGTAAGATGCCGCCTGGTGAGGAGGGTGAGAAGGCTCGTGCCAGTCCTACGGTGAGCGGCAAGTCTGCATCCGAGTCCAAAGCTCTGGACATCCTGCATCAGCATGCTAGCCAGTACAAGAGCAAATCTCCGACGGTGGGTGAAAAGACGCCCCATGAAAGAGACCGAAGTGGGAGTGAGAGGGAAAGAGACGGTGAACGTCCAAGATCTTCACCCTCTCAGCGGATCATGCCTTCCCACCATCACTTAAGCTATCCACTACTCCCGGGACAGTACGACCTGTCTTATGCTACAGGTATCTCCTCTTCAGCCATTGTTGCAAGTCAACAAACCTCTGCCCCCTCACTTTACCCCCCAGCACGGAGG

Function

symbol description
znf609a Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF609 (zinc finger protein 609).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000127_00328606_00381628.mRNA False 4164 mRNA 0.51 7 328606 381628

Neighbor

gene id symbol gene type direction distance location
CI01000127_00228951_00250901 NA coding upstream 77536 228951 ~ 251210 (+)
CI01000127_00212366_00219489 NA coding upstream 108080 212366 ~ 220526 (+)
CI01000127_00134164_00167383 NA coding upstream 160954 133997 ~ 167652 (+)
CI01000127_00124653_00128538 RFX7 coding upstream 199750 124540 ~ 128856 (+)
CI01000127_00122221_00124505 RFX7 coding upstream 204101 122221 ~ 124505 (+)
CI01000127_00410400_00493036 NELL2, NELL2A coding downstream 28772 410400 ~ 493036 (+)
CI01000127_00537554_00538768 RXFP3.3B coding downstream 155330 536958 ~ 538930 (+)
CI01000127_00556244_00559562 FEM1B coding downstream 174476 556104 ~ 560128 (+)
CI01000127_00608317_00617104 NA coding downstream 226689 608317 ~ 617720 (+)
CI01000127_00695240_00700816 V1AR2, AVPR1A, AVPR1AA coding downstream 313316 694944 ~ 701459 (+)
G339998 NA non-coding upstream 18023 300853 ~ 310583 (+)
G339967 NA non-coding upstream 169265 157517 ~ 159341 (+)
G339928 NA non-coding upstream 217743 106397 ~ 110863 (+)
G339997 NA non-coding downstream 8190 389818 ~ 407498 (+)
G340055 NA non-coding downstream 120553 502181 ~ 506329 (+)
G340059 NA non-coding downstream 129753 511381 ~ 511616 (+)
G340063 NA non-coding downstream 131681 513309 ~ 513668 (+)
G340064 NA non-coding downstream 132650 514278 ~ 514525 (+)
CI01000127_00079499_00100318 NA other upstream 247277 79277 ~ 101292 (+)
G340122 NA other downstream 375217 756845 ~ 758390 (+)
G340421 NA other downstream 449052 834385 ~ 835043 (+)
G340487 NA other downstream 606575 988203 ~ 1124150 (+)
CI01000127_02186896_02189070 NA other downstream 1795620 2186801 ~ 2189771 (+)
G340939 NA other downstream 2108930 2490558 ~ 2512877 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding CM030123.1 CM030123.1 27795968 ~ 27813231 (+)