XLOC_011405 (ltbp1)


Basic Information

Item Value
gene id XLOC_011405
gene name ltbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22956427 ~ 23116523 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022708
TGGAGTTCGAGCACAAACTCCTGCCCTTGCACACTCACACGCGCTCAAAGTTTTCCAAGACTTTTCAAACTTCTGCTCGAGCTCAAACCGCGCGCACGCGAGCTCTCTCGCCGCCTTGACTCCCGTTTTCCCCGATTTCCGTTTCGTGCTTTGAAACTTTCTTTAACTCCAAGCATTTTCCCCCTCTTCTAAGTTATGTTTGCCTCTAAGTGTTTTCTTATGGCGAATAGATGACAGCGCGCGAGGGTTTACAACTGCTTCACACGCGACACAGTGGAGCTGCGCTTCTATAGTTTTATTTTGGTATCTTTCTATCTATAGTGTATATTTATAGTACAGAGGCTTTCTTTCAAACTTCCCCAACACTTTGACTGCTAAAGGATATGGCTATGCTCGTGTGGGACATCATTGTTTCTGTTACGTTATTAATTTCTCCGGCTTTTCTTTCGGCGGATCAGAGCGGCTTCAGGAAACTGTACGTTGTGCAACCGGGACCGAGCGGTACGGACGGGGTTCACGTGAGCTCCATTTCATCGCTCTCGGGAGCGTCGGGACAGCCACACTCATACAATGTGGAGCTGAAAGCCAGCTTCGGTGGCCAGGTCCGGACCCGCAGAATGGGTCACCAGCAGAACCCGAGCATTCCGATCCGCCAGGACGCGCAGTCTGGCCGACACACATCCAGCCATCACATGAAAGTGTCAGGAGTGAACGTCTGTGGGGGGCAGTGCTGTGTTGGTTGGAGCAAGACCCCAGGATCTCAGCGCTGCACTAAACCTAACTGTACACCCCCATGCAAAAATGGAGGGATGTGCTTGGGGCcccacatgtgtgtgtgtaagccagGCTCTAAAGGCAAGTCCTGTGAACAGACCACTCTCCCTCCATCCTCTCATCCAACTGGACCACTAAATGGACACACCAATGGTGGAGTCCCAAACGGAGGTCATACGAACGGATACTCCAACGGTCATAATGTAATTCCCCAGCGCCCCATTCCTCAGCAGATCTTCCCACAGGGGCAAGGTCAAGTACCATTACCACTGCCCGGCACCAACGTTGGACATTTAACTCTGTCCATGAAGCCGTCAGTTAATGGACCCATTCCATATCAACCACAAATACAAAACCCAGTTTCGATGACGATGCACCAGAGTAAGTCCCAAAAGTTTTTGGTCCAGCAGAAAAactaccacacacacacgcagatgcAAGGAGTGGGACCCACCTTGAACCGTGCCATCCCGCTGTCAGTGGGCCACAACCCAATTCATGTGGGGAACCACACAGGCCGGATCAAGGTGGTCTTCACTCCGACTATCTGCAAGATGACCTGCACCAACGGCCGCTGTCAGAACAGCTGTCAGAAGGGAAACACCACCACTATCATCAGTGAGAACGGACACGCCACCGACACGCTCACCGCCCCCAACTTCAGAGTTGttGTTTGCCATTTGCCCTGCATGAATGGTGGAAAATGCAGCGCTCGGGATAAGTGCCAGTGCCCGCCAAACTTTACTGGAAAATTCTGCCAAATGGCGAGTCCAAATGGTCACCAGGGGCAGCATACTGTTGTAAATGGGCAGAAGACACATGTCCACTCAACACACACGTTACCCCTCACTTATGGCACTGGACAAAACCAAGGTATGGTGAATGTCCATGTGAAACATCCTCCTGAAGCCTCGGTCCAGATTCATCAGGTGTCTCCAGTGGACAGTAATGGACAAGTGAAGAACACGCAGTCCAGCCATTCCTTCACCTACCACAGCAGCAGCCAGAGCATCCAGCATGGGCACACTCACAGTGGTGTCATTTACCCCAACCAGCAAACATACCTCCAATACCAGCCTGTCACATCCAAGAGCCAACTAGGACGCTGCTTCCAGGAGACTACCGGAATGCAGTGTGGGAAAGCTCTGCCTGGACTATCTAAACAGGATGCCTGTTGTGGGACGGTGGGCACATCATGGGGATTCCACAAATGCCAAAAATGCCCCAAGAAACCATCGATTCCTTTGATTGAATGTCCTCAAGGCTATAAGAGACTGAATGGCACTCGCTGTATCGACATTGATGAATGTCAGCTTCAAGGTGTTTGTCCAAATGGAAACTGCATCAACACTGTGGGCAGCTATAGGTGTATCTGCAACCCAGGCTTTGTGCCTGATCCATCACTGACGTCCTGCTTCCCCGAAACACCTGCTCTTCGCGAGGAGAAGGGTGCTTGCTTCCGGTTTGTCGGTTCAGGGAAGCAGTGCTTGCACCCTGTGTCCACTCAGCTGAGTAAACAGTTATGCTGTTGTAGTGTGGGCAAGGCCTGGGGTCCTCATTGTGACCGCTGTCCTCTACCTGGGACAGCTGCGTTTAAAGACATTTGTCCTGGAGGTATGGGTTACCACGTCACCCCACCATACATTTACAAGCCCAAACCTCCTAATGGACACACTCAGACAGACAGTCAGGGGTACAACAATCCCACCATCAGACACCAAGTCCCTATGGATCCTCCAGTGCCCTTCCCCACCCTCCAGCAGCCCGTGGAGGCTCTGAGCATCACAGAGAGACAGCTGCCTGAGGTGGTGGAGAAAGTGTCACCACCGGCTCCAGTGGCAATTCCACCTTCCAATGAAGGTCAGGACATTACCCCAACACAGCTGGCTGAGATTGACGAGTGTGTAGTGAGACCTGATATCTGTGGTGCAGGAATCTGTTATAACACTGCTGAGAGCTACACATGCTTCTGTGATGACGGCTATAGAACGGACAGTGAGGGCACCACATGTGTAGATGTCGACGAGTGTGCGGAGAACCCAAGTTTGTGTGCTAATGGCCGTTGTCAGAACACTCCAGGCGGATTCCTGTGTGTATGTGAGCTTGGCTTCATGCCTAACGAGAGGGGCAGCAGCTGTTCCGATATTGATGAATGTCAGAACAGGAGAGCGTGTCCATCTGGTCTCTGCTATAACACTTTGGGCTCATTCATGTGTTCTCCCTGTCCGGATGGGTTTGAAGGAAAAAACGGCCAATGTGTAGATATAAATGAGTGTCTGGATAAAAGAGTGTGCGCTCATGGTCAGTGCTCTAATCTGGAGGGCTATTTCGTCTGCACGTGTGATGAAGGGTTCTTGCCCACTCCTGATGGCAAAAGCTGCACAGACATTGATGAATGTCAGGACGATAACGTGTGTATCCAAGGTCACTGTCAAAACACACAGGGGTCATTCATCTGCAACTGTGAGCCTGGCTTCAAACTGTCGTCCTCAGGAGACCAATGTGAAGATGTGGATGAGTGTTTGGTGATACCTCAGACCTGTGATGGTGTGGGCCAGTGCGTCAATATCTTAGGGTCTTACCAGTGCAATTGCCCACAGGGGTATAGACAAGTCAATAGCACCAGCTGCCTTGATGTTGATGAATGTGAAGATGATACACAACTGTGTATCCCGAATGGAGAATGTTTGAACACTGAGGGTtcattcctgtgtgtgtgtgatgctggcTTTGTGTCCACCAGGACAGGCTGTCAGGATGTGGATGAGTGTTCTCTGAATGAGAATACCTGTGGAAGTCATGGTACTTGTCAGAATACAATAGGCTCCTTCATCTGCCAGTGCGACCCGGGATTTAAGGACTCTCAGGATGGGCAGGGCTGTGTGGatgtgaatgagtgtgagctTCTCGGTAATGTGTGTGGTGAAGCCACCTGTGAGAACCGTGAAGGCACCTTCCTGTGTTTGTGTCCTGATGACCTGCAAGAGTTTGACCCAATGCTTGGCAAATGCATCTCTACACCTCCAGTCACAACGGTTGAGAGGAAAGAGTGTTACTTCAACCTGAATGATGAAAACCTTTGTGATAAGGTTCTGGCCAGCAGCATGACTAAAGAGGAGTGCTGCTGTACACTGGGAGCAGGATGGGGAGACAACTGTGAGGTCCATCCCTGCCCCATACCGGGAACAGATCAGTTCTCACAGATGTGTCCAGCAGGCCGGGGTTACCTGATTTCTGGAGATCCTATGAGTACTACCTCCAGCTTAGCAGAAAACACCAAAG
>TCONS_00022709
ATGCTCGTGTGGGACATCATTGTTTCTGTTACGTTATTAATTTCTCCGGCTTTTCTTTCGGCGGATCAGAGCGGCTTCAGGAAACTGTACGTTGTGCAACCGGGACCGAGCGGTACGGACGGGGTTCACGTGAGCTCCATTTCATCGCTCTCGGGAGCCTTCGGTGGCCAGGTCCGGACCCGCAGAATGGGTCACCACCATCACATGAAAGTGTCAGGAGTGAACGTCTGTGGGGGGCAGTGCTGTGTTGGTTGGAGCAAGACCCCAGGATCTCAGCGCTGCACTAAACCTAACTGTACACCCCCATGCAAAAATGGAGGGATGTGCTTGGGGCcccacatgtgtgtgtgtaagccagGCTCTAAAGGCAAGTCCTGTGAACAGACCACTCTCCCTCCATCCTCTCATCCAACTGGACCACTAAATGGACACACCAATGGTGGACGCCCCATTCCTCAGCAGATCTTCCCACAGGGGCAAGGTCAAGTACCATTACCACTGCCCGGCACCAACGTTGGACATTTAACTCTGTCCATGAAGCCGTCAGTTAATGGACCCATTCCATATCAACCACAAATACAAAACCCAGTTTCGATGACGATGCACCAGAGTAAGTCCCAAAAGTTTTTGGTCCAGCAGAAAAactaccacacacacacgcagatgcAAGGAGTGGGACCCACCTTGAACCGTGCCATCCCGCTGTCAGTGGGCCACAACCCAATTCATGTGGGGAACCACACAGGCCGGATCAAGGTGGTCTTCACTCCGACTATCTGCAAGATGACCTGCACCAACGGCCGCTGTCAGAACAGCTGTCAGAAGGGAAACACCACCACTATCATCAGTGAGAACGGACACGCCACCGACACGCTCACCGCCCCCAACTTCAGAGTTGttGTTTGCCATTTGCCCTGCATGAATGGTGGAAAATGCAGCGCTCGGGATAAGTGCCAGTGCCCGCCAAACTTTACTGGAAAATTCTGCCAAATGCATACTGTTGTAAATGGGCAGAAGACACATGTCCACTCAACACACACGTTACCCCTCACTTATGGCACTGGACAAAACCAAGGTATGGTGAATGTCCATGTGAAACATCCTCCTGAAGCCTCGGTCCAGATTCATCAGGTCAGCAGCCAGAGCATCCAGCATGGGCACACTCACAGTGGTCCTGTCACATCCAAGAGCCAACTAGGACGCTGCTTCCAGGAGACTACCGGAATGCAGTGTGGGAAAGCTCTGCCTGGACTATCTAAACAGGATGCCTGTTGTGGGACGGTGGGCACATCATGGGGATTCCACAAATGCCAAAAATGCCCCAAGAAACCATCGATTCCTTTGATTGAATGTCCTCAAGGCTATAAGAGACTGAATGGCACTCGCTGTATCGACATTGATGAATGTCAGCTTCAAGGTGTTTGTCCAAATGGAAACTGCATCAACACTGTGGGCAGCTATAGGTGTATCTGCAACCCAGGCTTTGTGCCTGATCCATCACTGACGTCCTGCTTCCCCGAAACACCTGCTCTTCGCGAGGAGAAGGGTGCTTGCTTCCGGTTTGTCGGTTCAGGGAAGCAGTGCTTGCACCCTGTGTCCACTCAGCTGAGTAAACAGTTATGCTGTTGTAGTGTGGGCAAGGCCTGGGGTCCTCATTGTGACCGCTGTCCTCTACCTGGGACAGCTGCGTTTAAAGACATTTGTCCTGGAGGTATGGGTTACCACGTCACCCCACCATACATTTACAAGCCCAAACCTCCTAATGGACACACTCAGACAGACAGTCAGGGGTACAACAATCCCACCATCAGACACCAAGTCCCTATGGATCCTCCAGTGCCCTTCCCCACCCTCCAGCAGCCCGTGGAGGCTCTGAGCATCACAGAGAGACAGCTGCCTGAGGTGGTGGAGAAAGTGTCACCACCGGCTCCAGTGGCAATTCCACCTTCCAATGAAGGTCAGGACATTACCCCAACACAGCTGGCTGAGATTGACGAGTGTGTAGTGAGACCTGATATCTGTGGTGCAGGAATCTGTTATAACACTGCTGAGAGCTACACATGCTTCTGTGATGACGGCTATAGAACGGACAGTGAGGGCACCACATGTGTAGATGTCGACGAGTGTGCGGAGAACCCAAGTTTGTGTGCTAATGGCCGTTGTCAGAACACTCCAGGCGGATTCCTGTGTGTATGTGAGCTTGGCTTCATGCCTAACGAGAGGGGCAGCAGCTGTTCCGGTAATTTCAACACTCTGTCCAATActgtatacaATATTGATGAATGTCAGAACAGGAGAGCGTGTCCATCTGGTCTCTGCTATAACACTTTGGGCTCATTCATGTGTTCTCCCTGTCCGGATGGGTTTGAAGGAAAAAACGGCCAATGTGTAGATATAAATGAGTGTCTGGATAAAAGAGTGTGCGCTCATGGTCAGTGCTCTAATCTGGAGGGCTATTTCGTCTGCACGTGTGATGAAGGGTTCTTGCCCACTCCTGATGGCAAAAGCTGCACAGACATTGATGAATGTCAGGACGATAACGTGTGTATCCAAGGTCACTGTCAAAACACACAGGGGTCATTCATCTGCAACTGTGAGCCTGGCTTCAAACTGTCGTCCTCAGGAGACCAATGTGAAGATGTGGATGAGTGTTTGGTGATACCTCAGACCTGTGATGGTGTGGGCCAGTGCGTCAATATCTTAGGGTCTTACCAGTGCAATTGCCCACAGGGGTATAGACAAGTCAATAGCACCAGCTGCCTTGATGTTGATGAATGTGAAGATGATACACAACTGTGTATCCCGAATGGAGAATGTTTGAACACTGAGGGTtcattcctgtgtgtgtgtgatgctggcTTTGTGTCCACCAGGACAGGCTGTCAGGATGTGGATGAGTGTTCTCTGAATGAGAATACCTGTGGAAGTCATGGTACTTGTCAGAATACAATAGGCTCCTTCATCTGCCAGTGCGACCCGGGATTTAAGGACTCTCAGGATGGGCAGGGCTGTGTGGatgtgaatgagtgtgagctTCTCGGTAATGTGTGTGGTGAAGCCACCTGTGAGAACCGTGAAGGCACCTTCCTGTGTTTGTGTCCTGATGACCTGCAAGAGTTTGACCCAATGCTTGGCAAATGCATCTCTACACCTCCAGTCACAACGGTTGAGAGGAAAGAGTGTTACTTCAACCTGAATGATGAAAACCTTTGTGATAAGGTTCTGGCCAGCAGCATGACTAAAGAGGAGTGCTGCTGTACACTGGGAGCAGGATGGGGAGACAACTGTGAGGTCCATCCCTGCCCCATACCGGGAACAGATCAGTTCTCACAGATGTGTCCAGCAGGCCGGGGTTACCTGATTTCTGGAGATCCTATGACAGATGCAGATGAATGCCAGCTCTTTGGAAGTGAGATCTGTAAAGATGGCTTTTGTCTCAACACCGCTGGCTGGTATGAGTGTTATTGCAAATCTGGACTCTACTACGATGAGAGCAAACTACAGTGTCTCGACACTGATGAATGCCAAGATGAGGCAAAATGTAGAGATGGTGAATGCATGAACACATATGGCTCATATCAGTGTTTCTGCACCCCTCCTATGGTTCTGGCAATGGACAACACACACTCATgtttgtgttttacagggcaaAGTGAAGCTGACTTATACTCAGGGGTTTGCTGGGAGAGAGTAACTGAAAACTTCTCCTGCGCAAATCCTATCCCCAACATACACACCTCATTCACAGAGTGCTGCTGTTTGTATGGAGAGGCCTGGGGCAACGATTGTGCTCTCTGCCCTGGGAAAAATACAGACTCCTATGCCCAAATGTGTAATATCCGTCGACCGTATGGTCGGGATGCTCTGGTCGCTGGCCCAATTGGGGTCAGCCCTGATTATAACCCTCAACCTCTGAATCCTGACGGCACGCTTCCATACATTGAAGATTACGATGAACCAAGAAATCCATATGATGCATTTGAAGGACTGCGAGCAGAGGAGTGCGGTGTGCTGAACGGATGCGAGAACGGTCGGTGTGTGCGGGTACAGGAGGGATACACCTGTGACTGCTTCGATGGATACACACTCGACATGTCCCGCATGGCCTGCGTGGATATCAACGAATGCTCCGAGCTGAACGCAAAGATGTCTCTTTGCAAGAACGGCAACTGCATCAACACACAAGGCTCTTATAAGTGTGTGTGCCTTCCAGGATTCATCCTCTCTGCCCAGCACAACTACTGCGTGCCCCACAGACAAAATGCCACCAGTACGGGCACAGAGTGA

Function

symbol description
ltbp1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human LTBP1 (latent transforming growth factor beta binding protein 1).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091202-8 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human LTBP1 (latent transforming growth factor beta binding protein 1).

Ensembl:

ensembl_id ENSDARG00000056922

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022708 False 4056 mRNA 0.51 24 22956427 23095090
TCONS_00022709 True 4287 mRNA 0.51 36 22956816 23116523

Neighbor

gene id symbol gene type direction distance location
XLOC_011403 ttc27 coding upstream 9310 22760126 ~ 22947117 (+)
XLOC_011404 dre-mir-456 coding upstream 129280 22827063 ~ 22827147 (+)
XLOC_011402 birc6 coding upstream 214698 22587356 ~ 22741729 (+)
XLOC_011401 yipf4 coding upstream 370831 22577472 ~ 22585596 (+)
XLOC_011400 BX511245.1 coding upstream 383771 22559055 ~ 22572656 (+)
XLOC_011406 rasgrp3 coding downstream 30453 23146976 ~ 23201215 (+)
XLOC_011407 AL935174.6 coding downstream 105654 23222177 ~ 23232294 (+)
XLOC_011408 AL935174.1 coding downstream 107281 23223804 ~ 23223920 (+)
XLOC_011409 AL935174.4 coding downstream 138842 23255365 ~ 23262007 (+)
XLOC_011410 fgfbp3 coding downstream 182405 23298928 ~ 23302321 (+)
XLOC_011395 NA non-coding upstream 885276 22069932 ~ 22071151 (+)
XLOC_011392 AL773596.1 non-coding upstream 1038863 21917448 ~ 21917564 (+)
XLOC_011389 NA non-coding upstream 1252936 21667797 ~ 21703491 (+)
XLOC_011412 AL929195.9 non-coding downstream 213648 23330171 ~ 23330311 (+)
XLOC_011413 AL929195.1 non-coding downstream 214896 23331419 ~ 23331559 (+)
XLOC_011414 AL929195.5 non-coding downstream 219078 23335601 ~ 23335741 (+)

Expression


Co-expression Network