CI01000127_02443481_02466467 (MYO5C)


Basic Information

Item Value
gene id CI01000127_02443481_02466467
gene name MYO5C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2442898 ~ 2466969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000127_02443481_02466467.mRNA
GTTTAAAAACATTTATCTTTTTTTTCTTCCTTTAGCAATGTTTTCATCGCTATGTGTTTTCATCAGTAATATTTTCTCTTTCCATCCATCTTGTCATAATAATTTCTGTTTATTCTACTTAATTTTTATCGAGTTTTAACTCTATTTTCTTCATCAGTAATCAAATCCAAAGTGCAGTGAACTTATTACCTCAGGCTGTAGCATATCTCTTTGAGTTTATTTAGAAAATTAAGACAATTAAACTTATTTATAAACTTATAAATTTATAAACTAATATTCTGAATTTTAGTAGGTTGAAACGTTCAGAGTAGCTATAATAATTTGTAGAATACACCGCGTGTTTATGAATATTTATAACTGGTGCGTGAATCTCATGAATATTAAGCAGCACAAGCCTTCACTATAGTAGGACTCGTAGTTTCGCCGGCGATCGCAGGTGAGCGAGGAAGTTCCCACCGTCATTTCCAGACTTTTAGCAGGTGTCATGACTAAAAAGTTATGCGTATGAATATTAGTTTTTAGCTTGTAAGTATCATGAGAAAGTATTTCATTATGAAATAAATCGGAAGCGACTCCTGTTGCCATGGCTCTGTCGGAGTTGTATACAAAGTATAACAGGGTGTGGATCCCTGACGCGGAACATGTTTGGAAATCTGCGGAGATTCTGACAGATTTCAAGCCTGGAGATACTGAGCTGGAACTACTGCTGGAGGATGGGACGGTTTTTGAGTTCTATGGAAATGAAAAAAAAAAGGAGTTGCAGTATCCTCTGGAAGGGGGTGAGAAGTTGCCACCCCTCCGAAACCCGGACATCCTGGTGGGTGAGAATGACCTCACGGCCCTCAGCTACCTTCATGAACCGGCCGTGCTACACAACCTCAAAGTCCGATTTGTCGAGTCCAAAATCATCTATACATATTGTGGAATTATCCTGGTGGCAGTCAATCCATACAAGCAGCTTCCCATCTATGGAGATGCAGTCATCCATGCGTATTCTGGTCAAAACATGGGCGACCTGGACCCTCATATATTTGCTGTAGCTGAAGAGGCCTACAAACAAATGGCCAGGAATAACAAGAACCAGTCTATCATTGTGAGCGGTGAGTCCGGGGCTGGAAAGACCGTATCAGCTCGGTATGCTATGAGATACTTCGCTATGGTCAGCAAATCTGGCAGCAAAACTCGAGTGGAGGACAAAGTTTTGGCATCCAACCCGATCACTGAGGCCATTGGAAATGCAAAAACAACCAGAAATGACAACAGCAGTCGATTCGGGAAGTACACTGAGATCAGCTTCGACAAAAGATACCAAATCATTGGTGCCAACATGAGGACGTACCTTCTGGAAAAGTCAAGGGTTGTGTTTCAGTCAGAGAATGAGAGAAATTATCACATCTTCTACCAAATGTGTGCTTGTGCAAATCAGCCTGAGTTCAAAGGCTTGAGACTGTTGGGTGCAAACAAGTTTAATTACACTCGTTTGGGTGGAGAGACGGAGATCGAGGGTGTGGACGACCGCGCTGACATGGCAGAAACACGCAGAACCTTCAGTCTACTGGGTCTTAAGGACAGTTTTCAGGCTGATGTGTTTAAGGTGCTCGCTGCAATTCTGCATTTAGGAAACGTAGTAATCAAGGAGAACAGCTCTGAGAAATCATCCATCGGTTCCAGAGACCCTCACTTGGCCATATTCTGTGACCTGATGGGCGTGAACATGGAGAACATGTGCCGCTGGCTATGTCACAGACGGATAGTCTTGTCAGCGGAGACGGTGGTGAAGCCGCAGCCTAAGGAACGTGCCATCAATGCCCGTGATGCCTTGGCCAAACAAATCTACGCCCATCTTTTCGACTGGGTCATCAACAAGATCAACCAGGCACTGATGGTCCCTGGGAAGCAACATTCATTTATTGGGGTGTTGGATATTTATGGATTCGAGACATTTGAAGTTAACAGTTTCGAGCAGTTCTGCATTAACTACGCCAACGAAAAGCTGCAACAGCAGTTCAACCTGCACGTGTTTAAACTGGAGCAGGAGGAGTACATGAAAGAGGACATTCCGTGGACGCTGATCGATTTCTACGACAATCAGCCTGTTATTGATCTCATCGAGGCTAAGATGGGCATCCTGGACCTTTTAGATGAGGAGTGTCTGTTCCCACAGGGCACTGATAAAAACTGGCTGCAAAAGCTGTACAATTTTCTAGGTTCAAACCCACTATTTGAGAAACCTCGTATGTCTAATGACTCTTTTATGATCCAGCATTTTGCTGATAAGGTAGAATATCAGTGTAAAGGTTTTTTGGAGAAGAACAGAGACACGCTTTATGAAGAGCTAGTCGACATCATGCGCACTAGTCAGTTTGCTCTCTTGGCAGATTTTTTTAAAGAGGAGGAACCAAATTCTGTCCACAAAATGATCAAAGTTAAACCAGCACAAGCCAGAGTCAAAGCTTCAAACAAGCAGCTGAGAACCACCGTAGGAGACAAGTTTCGAAGTTCCTTGTACCTGTTAATGGAGACACTGAACGCTACTACACCTCATTATGTGCGCTGTATTAAACCCAATGAGGAGAAACAGCCATTTGAGTACGACTCAAAGCGTGTGGTGCAGCAGCTGAGGGCCTGTGGTGTGCTGGAGACCATCCGCATCAGTGCCCAGAGTTACCCGTCCAGGTGGACGTATATAGAGTTTTACAGCCGTTACAGTATCTTGATGAGCCAGTCAGAGCTGAAGCTGGGAGAGAAGAAGCAGACGTGCAGGACGGTTCTGCAGAAACTCATTCCTGATTCCAACCAGTACAAGTTTGGTCGGACTAAGATCTTCTTTCGAGCTGGACAGGTGGCGTACCTAGAGAAGCTGCGTTTGGATCATCTTCGTGGGGCTTGTGTGACCATTCAGAAGCACGTGAGGGGCTGGAGGCAGAGACGCAGGTTTCTGCACATGAGACAAGCTGCCATCACGATACAACAGTACGTGCGGGGAAAGAAACAGATCAGACGCACTGTCACAGCTCTGGCGCTGAAGCAGGGCTGGGCCGCTGTGGTGATTCAGAGACACTGTCGTGGGTATCTGGTACGGAAGATTTACCAGCTCGTCCTGAGGGCTGCAGTCATCATACAGGCCTACACCAGAGGATGGATGGCCCGCAAGCGCTACAGAAAGGCAAAGCCACCAGTCTCATCGTTTGTCTCAGAGTTTTTGACCATGCAGAAGTACGCTCGAGCTTGGCTGGTGCGCCGGCGGTTTCAAACAATGCGACGGCTGGTCATCAACGTGCAGCTGTCGTACAGAGTCCAGCAGCTGCGTAAGAAGGTGGAAGAGCAGAATAAAGAGAACCGTGGCCTCATGGAAAGAGTCACCAGTTTGTCCAATGCACGTGCTCAAGGACTAGAAAAGATTCAGGCTCTGGAGGTGGAGCTTGGAAAGCTAACCAATGACATGGCAGCCTTAGAGGAGAGGGCGAGAACAAACTCAGAAGAGGCCAATCAGGCAATCGCTCTGCTTCAGAATGATAAAGAGAAACTTGTTCAGGTGAATAAGGCTTTGGAACAGAAACTGAAAGACACGACCCTTCAGATGCAAGATCAATTTGAGAATGTAAAGAGAAAACTGATGGAAGATCTGGAAAGAGAGGAGAGGCTCAGAAAGTTGAATGAAGATGTTAATGATGGAGCTGATCTTCTCACTGCTTTTGACGGCATGGAGAAAGCTGCAAAGGTGATGGAAACTCAGCTGCGGGAGCAGAAAGAAGCTTATGGGAGTCAACTGGAAGCTCTGGTCTTCAAAAACGAACATTTAAACAAAGAGAACGAGCAGCTTCAAGCTCTCTTTCAGGAGAAAAGTAACGTCAACCAAAGCATCGGGCAGGAAGTGGCCCGCCTCACTGCTGAGAACATGGCGATTCCAGAACTGAAGCAGCAGGTGTCAGAATTGAACCGCCACAAACACGAGCTTGAGACCCAGTTACAAGATCAGAGCGCTGAGATGAGCGCAAAAATAAAGGAGTTATCAAATGAGCTTCAGCTCACTGTCGAAGAGGAGCAATCACAGCGCAGGCACCTGGAGGAGAAGATTACAGAGAGCGAGAGAAGAAGAGAAGAGATGGAGAGACAGATGGCTGACCTCCAGGAGGAGAACGAACAGCTACAGAAAGCTCAGCTCTCAGAGAGCGAAGCCAAGAACAAACTCAGACAGGAGACCTCACGCCTCACAGCTGAGAATATGGACTTTGAGGAACAGTTAGACATGAAGGACAGATTGATAAAACGACTCCAAGACCAAATCAAAGCTCTTCAAACACATGTGACAGCCAATCAGAAAGCAGTACCGGCTGTGCCCAAAGAGTACTTGGGCATGTTGGAGTACAAGAAGGAGGATGAAAGCAGGCTGATCCAGGCGCTCATACTCGAGCTGAAACCTCGTGGTGTGGGTGTGCAAATGATCCCCGGTCTGGCTGCACATCTCCTCTTCATGTGTGTGAGACACGCCGATTACCTCAACGATGGAAACAAGCTCAAGTCCCTCATGCGCGGCATCATTACAGCCATAAAAGAGGTGATCGCGGGCCACCAGGAGAATTTTGAAGTTCTGTCCTTCTGGCTCTCCAACACATATCACTTCCTCAACTGTCTCAAACAGTATAGCGGCGATGAGGAGTTCATGAAGCACAACACGCCTCGTCAGAATAAGAACTGCCTGAAGAACTTCGACCTATCTGAGCACCGGCAGATTCTCAGCGACCTCGCCATCAACATCTACCATCAGTTCATCAGCGTGATGGAGGACACGCTCTATCCCATGATCATCCCCGGGATGTTGGAGCACGAAAGTCTCCAGGGAATCTCCAGCATGAAGCCCACGGGTTTCCGTAAGCGCTCGAATAGCGTGTTCGAGGATGGCGGGGACCTCAGCGGGGCTGAGCCGTTCAGCGTGACCTCCATCCTGCAGCAGCTCGGCACGTTCCACACCAGCATGGCGCAGCAGGGCATGGAGCCGCAGCTGCAGGGTCAGGTCATACGACAGCTGTTCTACCTCATCGGATCCACGTCGGTGAACAGCATTCTGCTCCGTAAGGACCTGTGCTCCTGCCGGAAGGGCATGCAGATCAGGTGTAACATCAGTTATCTAGAGGAGTGGCTGCGAGAAAAGGGTCTGCAGAGCAGCTGTGCCATGGAAACACTGGGGCCGCTGTCTCAGGTCGCCTGGCTTCTTCAAGTCAACAAGACCACAGATGAAGACGCAGCCGAGATCAAGCAGAGATGCTCCGAGCTCTCGTCCGTGCAGATTGTGAAAATCCTTAACTCCTACACACCCATTGATGATTTCGAAAAGCGAGTGACTCCATCCTTTGTCCGCAAAGTGCAGGCGTTGCTGCAGGAGCGCGAGGGCTCGTCTCAGCTGATGATGGACTCACAGTATCGTTTCCAGGTCACTTTTCCCTTTTGCTCCTCGCCACAAGCACTGGAACTCCTACAGGTGCCCAGCAGCCTCCGTCTGGGCTTCGCCACTCGTATTTGACCTTTAACCTCTGACCTTAGTGATCTCAGGACCAGGGGCCAGTTGCATAAAATGCTTAGACATCTTTTTTTTTCTGTAAGACTAGTAATAACTTTTTTTAAGTCAGTTACATAATGTAGAAAGGTGTAATTTGAATCTGAAAAGTAAGACTAATTATTACCTCTTGGCAAACTGCTAGTTGGTCAGACTGGTTGTTAACTGTGTTTATGCGTCTGACACCAGTACTTATGATCAGGATGTGTCTGTGCTGACCTGAATGCATTATGTAAACACTGCTAACATTAATGCTAACATTTGTATATTTTTAGATTTATTTATAAATATTTTAATCACATGTTCTCTAAATAGTATCTTTTAGAATAGCTTTTTATCAACCATGAACAAACACTGTAACATACTATTCAATAACCCAAACCAGCCTCACATGTTCAGCTCCATTTTGTAAATCCTAAATAGTTATTGTCACAAATTGCTCTTCCGTTGAATTTTTTATAAATCAGAA

Function

symbol description
myo5c Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle. Is expressed in intestine. Orthologous to human MYO5C (myosin VC).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000127_02443481_02466467.mRNA True 6023 mRNA 0.46 39 2442898 2466969

Neighbor

gene id symbol gene type direction distance location
CI01000127_02352702_02353332 NA coding upstream 89305 2348712 ~ 2353593 (+)
CI01000127_02195670_02218131 NA coding upstream 224119 2195495 ~ 2218779 (+)
CI01000127_02186896_02189070 NA coding upstream 253127 2186801 ~ 2189771 (+)
CI01000127_02104870_02106881 NA coding upstream 335721 2104870 ~ 2107177 (+)
CI01000127_02075266_02086856 EPS8L2 coding upstream 355423 2075266 ~ 2087475 (+)
CI01000127_02467913_02475731 GNB5, GNB5A coding downstream 944 2467913 ~ 2476306 (+)
CI01000127_02477517_02488780 AP4E1 coding downstream 10548 2477517 ~ 2489109 (+)
CI01000127_02532996_02543896 DRD4A coding downstream 66027 2532996 ~ 2543950 (+)
G340930 NA non-coding upstream 3476 2439206 ~ 2439422 (+)
G340929 NA non-coding upstream 7149 2435219 ~ 2435749 (+)
G340912 NA non-coding upstream 53045 2374056 ~ 2389853 (+)
G340908 NA non-coding upstream 59035 2354416 ~ 2383863 (+)
G340940 NA non-coding downstream 24309 2491278 ~ 2492028 (+)
G340939 NA non-coding downstream 34083 2490558 ~ 2512877 (+)
G340946 NA non-coding downstream 54060 2521029 ~ 2521255 (+)
G340950 NA non-coding downstream 59094 2526063 ~ 2526287 (+)
G340952 NA non-coding downstream 59874 2526843 ~ 2529730 (+)
G340487 NA other upstream 1318748 988203 ~ 1124150 (+)
G340421 NA other upstream 1607855 834385 ~ 835043 (+)
G340122 NA other upstream 1684508 756845 ~ 758390 (+)
CI01000127_00328606_00381628 ZNF609A other upstream 2083657 328474 ~ 381628 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location