XLOC_011411 (ppp1r3ca)


Basic Information

Item Value
gene id XLOC_011411
gene name ppp1r3ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23311377 ~ 23314178 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022716
GGCGTGGAGTGGGTGTGTCGGCACAGCACAGCAGACAGGCTGCAGGTCTGGGCTCCGATGCTCTCGATATAAGGAATTTTACACTGAAACCAGTCCTCTGGAATAGCTTACAAATCCTGTGTTTTATGCATTGTGCTTTGTGCAAGTGACCACTTTAAACTGAAACACTTTCTCCATGAGTTCCACAAGaGTCCTTCATATCCTCAGTCCCCCAATGCCGGGTCCAGTAATGCCCGTGGATGTGGCTGTGCAGCTTTACATCACCCATTCACCCCCACTGCGTAACTTCCTGAGTTCATATGAAGACTACAGGACACGCAATCTGGTCAGCAACTGCTGCAAACCCCTGCGGCCCTGCTTGAGCTCCAGAGCCCAACTGGAGCACTCCTGTCGGAGCTGGCAAAACCCAAAATCTAAGACTAAAAAGAAGGTGGTGTTTGCAGACTCAAAGGGTATGTCATTAACAGCGGTGCACGTCTTCTCAACATTCGATAACAAAGAAACCGCTACATCTGAACTGCAGTTTGACCTGGAAGACTTGGAGGAACTCAAAAACACTCTCCATATCAATTCAGTCCAGAGCAGGATTCTGGATTTTCTGCAACCAGCAGCAGACTACCTGGATTTCCGTAGTCATCTGCTGAAGAACTTGGTTTGTTTGGAGAACTGTACCCTACAAGAGCGGGCCCTCACCGGCACGATCAAAGTGCGTAACCTGGCCTATGAGAAGTCTGTTCATGTGCGCATCACTTTCGACAGCTGGAAGAGCTTTGAGGACATTGAATGCACATTTATGAATAATGTGTACGGATGCCAGGACACAGACACATTTTCATTCGCAATTGAATTGCCTGGGTATGTTCCCCCTCAGAATAAGGTCGAATTTTGCATTAGCTTCAGGACTGGAGAGCAGATCTATTGGGACAACAACGATGGTAGAAATTATGGACTGATTTCAACATCCTGGCAACAGAACAATAAATTGAATTCCTCAACCCAGACCAAAAAGTCAGATGAATTCAGGAAGAAGAGCAGTAAGAAAACACAAGAGAAGGGcgtttttaaatgtaaaagttcACTACAATCCAATGGCATTTTTCCAAATTGGCAGAGTTGGGGTCAGATTGCAGCAACCGGCCCCTACTGGTGACCTGAGCTGACATCCAAATAAGCTAAAAGGCTTTAGCAATGGTGATGATTAACTTTCATTGAAAAGCTCTTAATATGATTTACCTGCTGATTACTTTGCAGGTAATCCCAGATCAGCTGTCTATTAGCAGTTTAATGAGGGAACAGTGGCTGGTTGAAATGGTCACAGAGTGAAACTTTGTTTCTTTCAGATGGAACATGTTGCTGCAGTGCAATACAGAgtgttatattgttttgttaatgtaaGATGTGTGATGACCCTTTTTCTAAAGAGCTAGACTTGTCTGTAAACGAGACCACTAGGGGTCTGGAATAAACACTATATAGGAATGTGTGCTATGACTTATGCTGTAAAACTACTACCATTGGCATCCAACATCTGCAGAATCTGCACTATGCAAAAATGTAATCAAGTCTGATGATTTGAAGAGATTGTATATCTAAAGCCTGTTTCATACTTACCAATTTCAGACGATTTTTAAGTTAAAGATTTTATCATGGAAGAGACGAACAGTTGGTGTGCAATCGGTGGGATTATCCTTCATATTGAAGGAGTATCTggttaataatgtttaaaactgAAAAAGAGACAGAAATAAtagtatttatcatttttaatacatACTCCTCCTTGAGGAAAAAAATCAGCCGTGAAATTCAAGTTGGTTTAAATCATTTTGTTTATCAAGCTTTCTACCTGCAAGATGTGCTTATGTTTAAGGgtttacttttttattcacatttgtgTTGGATGTTTTAGAAGGTTAGTGTGCTGAATTGAATGCAAATGAATGCAATAAGCTAAACAAATGGCCTGATTATGGCTTCTGTGCCTTAGGATCTGCTGAGCAAATGTCAGTACCTTTTGTTTTAAGTGCAATCCAGTGAATCCGAGCAGAATTGGTTGTGATGTCATGTTTGAATCAGATGGAAtggatgtattttattaacgAAAGAATGGATGCCTTGGTAAAAGAATGTGTATTTGGTTtgatgtttctaaaataaaatctgaaaagtt

Function

symbol description
ppp1r3ca Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Is expressed in several structures, including forebrain neural keel; margin; presumptive diencephalon; tail bud; and yolk syncytial layer. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005979 regulation of glycogen biosynthetic process biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:2001069 glycogen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-70 Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Is expressed in several structures, including forebrain neural keel; margin; presumptive diencephalon; tail bud; and yolk syncytial layer. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C).

Ensembl:

ensembl_id ENSDARG00000071005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022716 True 2170 mRNA 0.41 2 23311377 23314178

Neighbor

gene id symbol gene type direction distance location
XLOC_011410 fgfbp3 coding upstream 9056 23298928 ~ 23302321 (+)
XLOC_011409 AL935174.4 coding upstream 49370 23255365 ~ 23262007 (+)
XLOC_011407 AL935174.6 coding upstream 79083 23222177 ~ 23232294 (+)
XLOC_011408 AL935174.1 coding upstream 87457 23223804 ~ 23223920 (+)
XLOC_011406 rasgrp3 coding upstream 110162 23146976 ~ 23201215 (+)
XLOC_011412 AL929195.9 coding downstream 15993 23330171 ~ 23330311 (+)
XLOC_011413 AL929195.1 coding downstream 17241 23331419 ~ 23331559 (+)
XLOC_011414 AL929195.5 coding downstream 21423 23335601 ~ 23335741 (+)
XLOC_011415 AL929195.8 coding downstream 27696 23341874 ~ 23342014 (+)
XLOC_011416 AL929195.3 coding downstream 32060 23346238 ~ 23346378 (+)
XLOC_011404 dre-mir-456 non-coding upstream 484230 22827063 ~ 22827147 (+)
XLOC_011400 BX511245.1 non-coding upstream 738721 22559055 ~ 22572656 (+)
XLOC_011395 NA non-coding upstream 1240226 22069932 ~ 22071151 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_00771735_00772667 PPP1R3CA coding CI01000313 null 771488 ~ 772813 (+)