Fish Transcriptome and Expression Database

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model fish

XLOC_011417 (AL929195.7)

Basic Information

Item	Value
gene id	XLOC_011417
gene name	AL929195.7
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	23348329 ~ 23348469 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022722
ATTCTTTCGCAGAGGCAATATCATAGCCTATGAGGCCTAGCCGAGGCGTGATCATTgctgtttgaaaactttacccAATACCCCGCCGAGATGGCTTGAAATACAGTCAGCTCTGGCAATTTTTGACAGCCTCCTAGAAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113816

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00022722	True	141	snRNA	0.48	1	23348329	23348469

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011416	AL929195.3	coding	upstream	1951	23346238 ~ 23346378 (+)
XLOC_011415	AL929195.8	coding	upstream	6315	23341874 ~ 23342014 (+)
XLOC_011414	AL929195.5	coding	upstream	12588	23335601 ~ 23335741 (+)
XLOC_011413	AL929195.1	coding	upstream	16770	23331419 ~ 23331559 (+)
XLOC_011412	AL929195.9	coding	upstream	18018	23330171 ~ 23330311 (+)
XLOC_011418	AL929195.4	coding	downstream	1951	23350420 ~ 23350560 (+)
XLOC_011419	AL929195.10	coding	downstream	7881	23356350 ~ 23356490 (+)
XLOC_011420	AL929195.6	coding	downstream	35130	23383599 ~ 23383739 (+)
XLOC_011421	AL929195.2	coding	downstream	39337	23387806 ~ 23387946 (+)
XLOC_011422	NA	coding	downstream	54653	23403122 ~ 23404188 (+)

Expression

Co-expression Network