Gene
RNA
| Item | Value |
|---|---|
| gene id | G340760 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000127 |
| NCBI id | null |
| chromosome length | 2607226 |
| location | 1991377 ~ 1992640 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU387766 | False | 903 | lncRNA | 0.42 | 2 | 1991377 | 1992555 |
| TU387767 | True | 988 | lncRNA | 0.41 | 2 | 1991377 | 1992640 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000127_01944313_01948146 | NA | coding | upstream | 43231 | 1944313 ~ 1948146 (+) |
| CI01000127_01932310_01942852 | THOC5 | coding | upstream | 48387 | 1932310 ~ 1942990 (+) |
| CI01000127_01882281_01884037 | NA | coding | upstream | 107326 | 1880780 ~ 1884051 (+) |
| CI01000127_01865774_01877178 | INCENP | coding | upstream | 114133 | 1865774 ~ 1877244 (+) |
| CI01000127_01820087_01824878 | NA | coding | upstream | 166261 | 1820087 ~ 1825116 (+) |
| CI01000127_02036889_02038557 | NA | coding | downstream | 44249 | 2036889 ~ 2039521 (+) |
| CI01000127_02075266_02086856 | EPS8L2 | coding | downstream | 82626 | 2075266 ~ 2087475 (+) |
| CI01000127_02104870_02106881 | NA | coding | downstream | 112230 | 2104870 ~ 2107177 (+) |
| CI01000127_02186896_02189070 | NA | coding | downstream | 194161 | 2186801 ~ 2189771 (+) |
| CI01000127_02195670_02218131 | NA | coding | downstream | 202855 | 2195495 ~ 2218779 (+) |
| G340729 | NA | non-coding | upstream | 77305 | 1909023 ~ 1914072 (+) |
| G340695 | NA | non-coding | upstream | 258249 | 1732896 ~ 1733128 (+) |
| G340692 | NA | non-coding | upstream | 260281 | 1730841 ~ 1731096 (+) |
| G340685 | NA | non-coding | upstream | 268676 | 1720638 ~ 1722701 (+) |
| CI01000127_01668221_01681515 | SLC25A3, SLC25A3B | non-coding | upstream | 323840 | 1667311 ~ 1681739 (+) |
| G340761 | NA | non-coding | downstream | 1622 | 1994262 ~ 1995843 (+) |
| G340786 | NA | non-coding | downstream | 51290 | 2043930 ~ 2044147 (+) |
| G340789 | NA | non-coding | downstream | 52310 | 2044950 ~ 2117294 (+) |
| G340771 | NA | non-coding | downstream | 106132 | 2098772 ~ 2101245 (+) |
| G340788 | NA | non-coding | downstream | 116828 | 2109468 ~ 2115301 (+) |
| G340487 | NA | other | upstream | 867227 | 988203 ~ 1124150 (+) |
| G340421 | NA | other | upstream | 1156334 | 834385 ~ 835043 (+) |
| G340122 | NA | other | upstream | 1232987 | 756845 ~ 758390 (+) |
| CI01000127_00328606_00381628 | ZNF609A | other | upstream | 1632136 | 328474 ~ 381628 (+) |
| CI01000127_00079499_00100318 | NA | other | upstream | 1910048 | 79277 ~ 101292 (+) |
| G340939 | NA | other | downstream | 497918 | 2490558 ~ 2512877 (+) |
