G340800


Basic Information

Item Value
gene id G340800
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2150640 ~ 2153275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU387821
GTGATCCACAACTGACCTTCAAAAAGGAAGGTTTCATTCCAGTGAGGGTTGAGATTTTTCCTCTTGACTTTGGTCTCGAGTTTGTGCTTTCTGTCGGGCAGCAGGTAGATTTTGACGAAGGGGTCGGAGGTCCCAGAGAAGTCTTTAGCGGGCAGGTCTTGACCTTTGAGTATCTTCACCGTCAGAGTCGTGTCTTGGAAGCTGTAGCCCAAGCTGAACTGAATCCGGCCCAGTTTCTCGCTCACTGGACCTTCGTGGTCGTCGTCTTCCGACCCCGGAGACAACATCACCATGTCTCCAGTGAGCGAGTTGGCAAGGTCAGACACTGAAGAATGGCCGTCGGCATCTGGCGGCTGACCCTTAGGACTGTTAGCCGGCTTATTCCCCATATTCCTACTGCAGGGTGAGAGACAGACAGAGAGAAACACAGGTTACTAAAAATACCAGTCATGTGTGACTTGCCCTGCGTTTCTTTCTCTTTGCCACAGAATCAAACCCAGATGACCTTTTGACCTCTATGAGCGTCGACTCGTGTTATTCTGACCGGCTTCATCACACATTTTAGAAACGGACAAGAATATGAAGAAGACAAATTAATAACAAGCATGAGAATGATTTTTACTTTCGATCACTTGAACACAATAAAATAAAGCCACAACAGAGAAATAGAAAAGAAAAAGCACATAGTTCAAACTTTGACACATTTCCTGTTATAAAACATAAAAACATTGTGTTACCTCAGTTTATAACACACCATAAACTGCCAATATTCAGGGTTATTAAATATCTCAGCAAACACATAAAGCTGTCAATTCATCACGCCACGGTGCGGTCCGTTTCGTTTTCCAGGGGTTGGTGTCCGAAGTCGGATTTGGGCGGCTGGCCTGGACTGGAAAATCGACTTAATATGGGAATAATATGGGTTAAGTACAAGTAAAGCTGATTTATAGGCATTTGTAGTATAATGCTCATTACCACAGACAATAATTTTGACTTAAAAAAATGTTTGTAGCCACAGAAAATAATTTTGACACATTACTCCGTTTAATAAAATTAATTAAACTGTAATTAAACTGTATTGCAACAGAAAATAATTGTGACTCATTGCTCAGTTAAAGTAATAAAGTAAAATAAAATAAAATAAAATAAAATAGGTTTAATGCTACAGAAAATATTTTGCACTCATCTGTCCATTTAATAAAATAAAATAAAATGAATAAAATAAAATAAAATGAATAAAATAAAATAAAATTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387821 True 1257 lncRNA 0.39 2 2150640 2153275

Neighbor

gene id symbol gene type direction distance location
CI01000127_02104870_02106881 NA coding upstream 43463 2104870 ~ 2107177 (+)
CI01000127_02075266_02086856 EPS8L2 coding upstream 63165 2075266 ~ 2087475 (+)
CI01000127_02036889_02038557 NA coding upstream 111119 2036889 ~ 2039521 (+)
CI01000127_01944313_01948146 NA coding upstream 202494 1944313 ~ 1948146 (+)
CI01000127_01932310_01942852 THOC5 coding upstream 207650 1932310 ~ 1942990 (+)
CI01000127_02186896_02189070 NA coding downstream 33526 2186801 ~ 2189771 (+)
CI01000127_02195670_02218131 NA coding downstream 42220 2195495 ~ 2218779 (+)
CI01000127_02352702_02353332 NA coding downstream 199427 2348712 ~ 2353593 (+)
CI01000127_02443481_02466467 MYO5C coding downstream 289623 2442898 ~ 2466969 (+)
CI01000127_02467913_02475731 GNB5, GNB5A coding downstream 314638 2467913 ~ 2476306 (+)
G340789 NA non-coding upstream 33346 2044950 ~ 2117294 (+)
G340788 NA non-coding upstream 35339 2109468 ~ 2115301 (+)
G340771 NA non-coding upstream 49395 2098772 ~ 2101245 (+)
G340786 NA non-coding upstream 106493 2043930 ~ 2044147 (+)
G340761 NA non-coding upstream 154797 1994262 ~ 1995843 (+)
G340836 NA non-coding downstream 50065 2203340 ~ 2296340 (+)
G340889 NA non-coding downstream 144826 2298101 ~ 2299702 (+)
G340890 NA non-coding downstream 153684 2306959 ~ 2316097 (+)
G340895 NA non-coding downstream 165854 2319129 ~ 2319452 (+)
G340896 NA non-coding downstream 166298 2319573 ~ 2319855 (+)
G340487 NA other upstream 1026490 988203 ~ 1124150 (+)
G340421 NA other upstream 1315597 834385 ~ 835043 (+)
G340122 NA other upstream 1392250 756845 ~ 758390 (+)
CI01000127_00328606_00381628 ZNF609A other upstream 1791399 328474 ~ 381628 (+)
CI01000127_00079499_00100318 NA other upstream 2069311 79277 ~ 101292 (+)
G340939 NA other downstream 337283 2490558 ~ 2512877 (+)

Expression


Co-expression Network