G340836


Basic Information

Item Value
gene id G340836
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2203340 ~ 2296340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU387861
TATTATTATTATTTATTTTTTTTTTTTTTACATAACGAAAAATTAAAGGTTCCTTAATTTTCTTAATATAACATATATTCTCATTTTTTATTTTTTTAAGAGGTAAAATATGACCAGGACATGTTTTCGTGAGACTCAGCCGTGTTTATGTATTTTGATAATTTCTTAATTATTGCATAAATATGTGCTGGTCCTTCTATATATACTCTTCATTACATGAAGAGTGAAATCACAAATATCTAACATCTAATTTACTACTAAATAAGATCGAATACTATCAATTTACATCGATTATATGATTCAAAGATACATTCTCTGGTTTGTCGAAACAAACAGGCGATACGTTGCTTATAATATGTGTCGTCTAGTATATTGAATATTGTACGATATCAAAGGGGCGTGTGAGTATTGCGCTTGTGCCAGATCTGTTTTTGTGCTTGGATTGTAAAATCATCAGTGCTATTTTTGGTGTTTTTTGCCACCTGCTGTCTAATTCCTTCAAGTACAAGGAAAGGAAGAAGGACAGATGGTGAAAACGAGGGAGAGAGTGAATAACACACTTTAGTGTTACATAAATGAGGAAGAAGAAACGCACGACACGCTCAATTACACCAGTGCGCACCATTGACCCCTCACACAACACACGACCGTTCACAAACACAACAAGCTCACAGCTCATAAAACATGACGGAAATCAGAGGTACGATTAAAAAAAATACAATTTAGAAAACAAAAACAGTCTAAACAAGACTAAATCATCATAATCAAAGCAAAACAACAGAAAACAATCATCACAATACTAAAAATAATCACAGATCGTAAGATAGCTTTTGGAATGTTTAGGAAAAAACCAATACAAGGCAAAACAAGGTCAGATTCAAATTAGGCATAAAACTTACTTCCATTTTAATACCATTTGCAACAATTAACGATATGTGAGGTAACCGGTCAGAAGGGTTATGCATGTGTTGACCTTGTAAAGTCCGACCTATGACCTTTAAACAATAAATAAGAGCATCTGAACAGTTTTAAATGGCATAAAGCTCATTGTCACAGAGACTAGAGATGTTTACTTGTTAGACAGCACCATAAAACCCTCTTGACCTCAAGCTAATGAATACTTAGCATCATTTTCTTATTAATTAGTGATATTCTAGAGTACACTGAGTGTTTGAGAGTTTGGGGTCGGTAAGATTTTTTAAAAGAAGCATTTATTTGATCAAAAATACTGTAAAACAGTGATATATTATTATAATTTAAAATAATTGTTTTCTGTTTGAATATATTGTAAAATGTAATTTATTCCTGTGCTGCAAAGCTGAATTTTCAGCATCATTCAACATTTTATATTTAGTGCAAGTTTTTAAAATATTACAACATTTTAAATAGTTTTATAGAGGTTGTACCGAATGACCTGATGCGTATGCGAGATGTTTCAGAAAGTGGTGGGGACAATATTGACCCTGGCAAAAAGTGGTGGGGACATTTCCCACCCGTCCCACCCGCAAATTACGCCTATGTATCCAGGGCTTGACATGAACTGAGGCTAGTGGTTTTCCAACCACTCAGTATTTTCACTGGACACAGTTTTGACATCGATACCATGGGAAAAAACTGCCTTATAGATATTTTTAATATTACCTCATAATTTGGCAGCAGGTTTATTAGGCTGCTGTCACTTTAAGACCTGATGCACGGATCCATTATACTGTTACACAAGCGTTTTCTTTCTCAACTGTTTACGTTCACTTAAAACATAACTGACTGTGTTTACGTGAATACTTGCCAAGACCGGCATTTTGACATTATTTTGTGTGTATTTGACTGTTTAAGCGCAATAAGCAGTGAAAAAGAACTCAGTTTAGTACTGAGAGGCAGCTTTATGTGTGCCGCACTTTGGGTGTGATGATAAAATCTGTGGGAATGAGTAAAATTATGCGCAATATACGCAATCCCATGTTGAAATTCAAGCTCTGTAACACCAGCAATATTCATCCGGAGCAAATGAAACAAGTGAGTGACGGGAGGCGGGTTTGTGTGTCGACTCGCTGTCGGAGAGATGAGAGAGCGACAGCTGATATTGTGTATCTATTCTGCAGAAGCATCAGATACTTCAGTGTCGATATATATTGAAAAATTTATATTTTTGACAACACTACATTGCACTTAGTTTATTATTTCAGATGCCTTTTTAAAAGACAACAATGTACATATTATATATAAAATTTAATATTTTTGTTGTTTTGTTGTCGTTGTTAATGTCAAGCTCTAACCATGTCAATTCACATTGACCATGATTATAAGGGGTGGTTTAATCCTTTTCTAAAACATTCAATAGAAGCTTGTGACATATAAACACGCACATCAACCCAATCACTATATTTTACATTCAAATACACCCGCTGCAATGTGGCGTCAGGCACGATGCAAGCTAGTTTCAGCCCAACGCAGTTATCATTTTCACGTCCTGCACTGCGTTGTTTAAATAGCAAATGCATTTGCGCCCATTTGTGTGCCCATGGGCGTGCTGGTCTGAAAAAGAGCTGTGTTCGGGTGCATTGTTGGCGTGTTGCTATTTTGAGGGAACTGAAATAGACTGCGCCATTGACCAACTGAAACCTGGTCTAAAGTCAATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU387861 True 2637 lncRNA 0.36 2 2203340 2296340

Neighbor

gene id symbol gene type direction distance location
CI01000127_02186896_02189070 NA coding upstream 13569 2186801 ~ 2189771 (+)
CI01000127_02104870_02106881 NA coding upstream 96163 2104870 ~ 2107177 (+)
CI01000127_02075266_02086856 EPS8L2 coding upstream 115865 2075266 ~ 2087475 (+)
CI01000127_02036889_02038557 NA coding upstream 163819 2036889 ~ 2039521 (+)
CI01000127_01944313_01948146 NA coding upstream 255194 1944313 ~ 1948146 (+)
CI01000127_02352702_02353332 NA coding downstream 56362 2348712 ~ 2353593 (+)
CI01000127_02443481_02466467 MYO5C coding downstream 146558 2442898 ~ 2466969 (+)
CI01000127_02467913_02475731 GNB5, GNB5A coding downstream 171573 2467913 ~ 2476306 (+)
CI01000127_02477517_02488780 AP4E1 coding downstream 181177 2477517 ~ 2489109 (+)
CI01000127_02532996_02543896 DRD4A coding downstream 236656 2532996 ~ 2543950 (+)
G340800 NA non-coding upstream 50065 2150640 ~ 2153275 (+)
G340789 NA non-coding upstream 86046 2044950 ~ 2117294 (+)
G340788 NA non-coding upstream 88039 2109468 ~ 2115301 (+)
G340771 NA non-coding upstream 102095 2098772 ~ 2101245 (+)
G340786 NA non-coding upstream 159193 2043930 ~ 2044147 (+)
G340889 NA non-coding downstream 1761 2298101 ~ 2299702 (+)
G340890 NA non-coding downstream 10619 2306959 ~ 2316097 (+)
G340895 NA non-coding downstream 22789 2319129 ~ 2319452 (+)
G340896 NA non-coding downstream 23233 2319573 ~ 2319855 (+)
G340897 NA non-coding downstream 23727 2320067 ~ 2320327 (+)
G340487 NA other upstream 1079190 988203 ~ 1124150 (+)
G340421 NA other upstream 1368297 834385 ~ 835043 (+)
G340122 NA other upstream 1444950 756845 ~ 758390 (+)
CI01000127_00328606_00381628 ZNF609A other upstream 1844099 328474 ~ 381628 (+)
G340939 NA other downstream 194218 2490558 ~ 2512877 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G165820 NA non-coding NC_056723.1 CM032092.1 2864948 ~ 2867570 (-)