G340889


Basic Information

Item Value
gene id G340889
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2298101 ~ 2299702 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU387915
CAACTGGCTTTTAAAGGGAATGAGAGATGAGACTCTCATCTCAGCGTTACGCCCAAAACACACCCATTACTCATTAAGAGACTAGGGACAACCCTTTTAGACCATGCGCCAGGTGCACCGACCATTTTTCCCATCGTTAAACTAACAAAAGTGGATTCAGATACGCCCTAAGTGCACTTGCGCCATGCGCTTTAGACCATGCGGATTCACAGTGTCCATGTTAACGTAGCTAGTGTTGATTTGATAAATAGAAAGTTCAAAAGAACAGCATTCAATTAAAAATAGAAATCTTTTGCAACATTGTAAGTGTATTTAGTGTCACTTTTGATCCATTTAATGCATCCTTCACTGAATAAAAGTATTGATTTCTTACAAAATAAAAAAATCTTACTGACCCCAAACTTTTGAACGCATTCAGTTGCAGGACGATATTAACCAAACGAGTTTAGGAAATCAGTGAACTAATGCTAAAACTGGGAAAGGAGACAGAGGTATATAGGCAGGGGTTTGTTCAGGAATCATTTGGCAGTATGAAACAGACTTGATTGTTTGTCAGCCTGAGCCAAAAACCGCTCTTCACTCCACACATGGGCAAGCTTATCTCGCTCTAGCCGACGTCGTGACAGCACGTATTGTGAGCGAGAACATCATGTTTTCGACTCCCACAATGGGCTGCAAATCGTAATAAAAGCAAACAGCGTCAAGTAAACGAGAACTACAACCTGGGTTTTTGTTTGGTTGATTTGGTAGTGCACACATGAACTTAAAGCTCACGATTCCAACACTGATACATTGCAGGTCCGGCTCAAACGGTGTAAACTGGCATATTAACTCTTCCAGATGCCAAAAACATAAACAGAAGGATCGGGGAGGTGTGCAAATAAGCCATCGTATACAAAACAAAAATCATAATATCATCTGCATAAGTACAGTACACAGTAATCAACAATGATCACACAAACAATCAGACACTGATAAAACTATCCATACAAATATATAGTGAGATATACTATAAGTGTGTTTACATCTAGATAATCAGGATTATCAATAAATATGACTTCGATCCGGTTTGGAACATGTGTGCTTTTCGGCTTCTCGACAAAACTGGAATGACTATTAAAATTACACTTGCAGATCCAGGCAGAACAGCCAGATGCGTTAATATTCATAATTATTAGCCCCGCCCATCATCGATTCGCCGGGCAGGGCTTACAATCAATATGCATGTTACTTTGGTGTTTTGGGAATTTTAACCTGGCATGTTACTATTCTTTCTCAAATCTGATCTGATAGTATAATATTGAACTTTTTGTAGTGGAATATCTATAACTAGCTGAAGTTGGTTTGCTGTGGGTGGGACACAATATGAAACGCTCATGAATATTAATTAAGTGATATGACGTTTCATTTAGTACGTAAGCATGTAAGAACCAGTGTAAGTACTATTTATATACTATTACAACTTTTATTAATACTTTGAATTAAATTTAGTTTTCATTTTAATTTTTAGTCATTTTGTTATGTGTTTTTGTCATTTTTATTATTTTACAGTTTTATTTTATTTTTTATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU387915 True 1571 lncRNA 0.37 2 2298101 2299702

Neighbor

gene id symbol gene type direction distance location
CI01000127_02195670_02218131 NA coding upstream 79322 2195495 ~ 2218779 (+)
CI01000127_02186896_02189070 NA coding upstream 108330 2186801 ~ 2189771 (+)
CI01000127_02104870_02106881 NA coding upstream 190924 2104870 ~ 2107177 (+)
CI01000127_02075266_02086856 EPS8L2 coding upstream 210626 2075266 ~ 2087475 (+)
CI01000127_02036889_02038557 NA coding upstream 258580 2036889 ~ 2039521 (+)
CI01000127_02352702_02353332 NA coding downstream 53000 2348712 ~ 2353593 (+)
CI01000127_02443481_02466467 MYO5C coding downstream 143196 2442898 ~ 2466969 (+)
CI01000127_02467913_02475731 GNB5, GNB5A coding downstream 168211 2467913 ~ 2476306 (+)
CI01000127_02477517_02488780 AP4E1 coding downstream 177815 2477517 ~ 2489109 (+)
CI01000127_02532996_02543896 DRD4A coding downstream 233294 2532996 ~ 2543950 (+)
G340836 NA non-coding upstream 1761 2203340 ~ 2296340 (+)
G340800 NA non-coding upstream 144826 2150640 ~ 2153275 (+)
G340789 NA non-coding upstream 180807 2044950 ~ 2117294 (+)
G340788 NA non-coding upstream 182800 2109468 ~ 2115301 (+)
G340771 NA non-coding upstream 196856 2098772 ~ 2101245 (+)
G340890 NA non-coding downstream 7257 2306959 ~ 2316097 (+)
G340895 NA non-coding downstream 19427 2319129 ~ 2319452 (+)
G340896 NA non-coding downstream 19871 2319573 ~ 2319855 (+)
G340897 NA non-coding downstream 20365 2320067 ~ 2320327 (+)
G340834 NA non-coding downstream 39935 2339637 ~ 2342955 (+)
G340487 NA other upstream 1173951 988203 ~ 1124150 (+)
G340421 NA other upstream 1463058 834385 ~ 835043 (+)
G340122 NA other upstream 1539711 756845 ~ 758390 (+)
CI01000127_00328606_00381628 ZNF609A other upstream 1938860 328474 ~ 381628 (+)
G340939 NA other downstream 190856 2490558 ~ 2512877 (+)

Expression


Co-expression Network