G340890


Basic Information

Item Value
gene id G340890
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2306959 ~ 2316097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU387916
AAAAAATCTGTATTTTAAAAAATATTCAGTACTGATGACAATGACTTAATATTCACTATTTAAAAAAAAAGAAAATAAATAACTAATATTGATAAAATATTTAATATTCAGTATTTTTTTAGATAAAAAAATATATTTAAAAAAATATATATAATATTTAATACACTTAATAACTAATATTCAGCCGTACTGAATAATATATTTATATATTATTGCTGACAATTACTTTTTATAACAACAGACACATTTAGCCTTCCCAGCACTACACTAAAAACCTCTGCTCTGTAATAAATACAATTATTCATTTAGCAGACGCTTTTATGAAAGTGAAATACAAATAAATAGCCAATGATGTCAAATCTGATGGACAGGCAGAGGTACAGTGTGGCCACAAGGTGGCAGTGCTTCATCTCTCTTCTCTGTCATGTGTCTTAATTTCTCAGTTCACCTCTCTTCATTCCTTCCTCTTTTATAGTCTCGATTCTTACCGATTCTTCCGGCATCTTGCAGCTGAATCTTCAGCATCTCCATCGGTGTTGTAACGATGACCTGACATGTTCCCGCCCCGCAGCCGGCCAGCATCTCTCGCAGCAGAGTGAGCTTCTGCCCATCCTTAGAGAGGTGAAATCTGAAGAAATCGTTTGCTGCCAGCTTGATGGCTTTTTCTGGAGTGACAAGAGTTAAGTTCACCGCAGCACCTCTGTACATGCCGAAGTATCCCTCCGACCGGATGGTCTTAATAAGGCAGTCTGACATGCTGGTATAGAGACGGGATCCATTCTGCTGGTTCTGAAGGCGAGTCTTGGCCAGATCGATGGGAAACACGCAGGTAACGCCGATCAGTCCGGCCACACCACCGTTTATTAGCTTGGCAGGCAAACTGATCTGTTTGTCAGCCATTTATCTGGGTCCCTGTACTTCTTCAGCGTGTGTGTGTGTGTTTAAGGCGTCAGTGTGCGCGTCTTTGCAGATTTCTCCGAGACTTTTTGGTTTTGTGATTTGGGATCTCAGTCCATTCGCCTTCTTGTGCCAGATATCTGAAAGACTTGGGAAGAGAGGGAATGATTGAGTCAGTGTTTTTATGATACAGGTGTCATCTCTCACTGTTTGACTCTAGGAATTCTTCACACTGGACTCTTTC
>TU387918
CACACACTGAGGGTCGTTAATAATTCACACTTTGACTCGACGGCGGTGGTCAATAATTCACCGGTGCCGTTTTCAGTCACCATGGAGACGCAGCCGAGCAGGGCATTGTGGGTATTGTCTGTGTGCTTCAACCCCTATGTAATATTAATGACGGTCAGGTAATGTAATACTGTGTGCTGAATTGATTGAGATGTGTCGGTATGTCACTACTGTGGCCGTGTTAGATGGTAATACCACAGTATTTTGGTGTGTACTGTACCATGGCTGCTGGTTAAATACCATACTGATACCATAGAGAAGAGAGAAATGCTGTGTTTGTGGATGTGTTCAAGGCTGGGAATGAAAACAGCCAGTGTGTCAGACCAGATGATAATGTGTCAGAGTGTGTGAATGGGCACAGTCAGCTCAAAATACTAGTCATCATGTTTATATTGATTTGTACATATACTGTGTGTGTGTGTGTGTGTGTGTGTTTATGTCTCACCCATCCTTAGAGAGGTGAAATCTGAAGAAATCGTTTGCTGCCAGCTTGATGGCTTTTTCTGGAGTGACAAGAGTTAAGTTCACCGCAGCACCTCTGTACATGCCGAAGTATCCCTCCGACCGGATGGTCTTAATAAGGCAGTCTGACATGCTGGTATAGAGACGGGATCCATTCTGCTGGTTCTGAAGGCGAGTCTTGGCCAGATCGATGGGAAACACGCAGGTAACGCCGATCAGTCCGGCCACACCACCGTTTATTAGCTTGGCAGGCAAACTGATCTGTTTGTCAGCCATTTATCTGGGTCCCTGTACTTCTTCAGCGTGTGTGTGTGTGTTTAAGGCGTCAGTGTGCGCGTCTTTGCAGATTTCTCCGAGACTTTTTGGTTTTGTGATTTGGGATCTCAGTCCATTCGCCTTCTTGTGCCAGATATCTGAAAGACTTGGGAAGAGAGGGAATGATTGAGTCAGTGTTTTTATGATACAGGTGTCATCTCTCACTGTTTGACTCTAGGAATTCTTCACACTGGACTCTTTC
>TU387920
GGTCCTAGTACTGAGCTTTGCAAAGCTTTGCATAAAAGTTTGTAAATATGTGTGTATATGTGTGTGTGTGTGTGTGTGTATTTACACACATATTTACAAAACTTTTATGTTAAATGTGATTAATCGTGATTAATTGATTTGACAGCACTAGCTGAAAGTTAACTAGTCTACTAACATGTAAACTTGTACTTACCTCTGTACATGCCGAAGTATCCCTCCGACCGGATGGTCTTAATAAGGCAGTCTGACATGCTGGTATAGAGACGGGATCCATTCTGCTGGTTCTGAAGGCGAGTCTTGGCCAGATCGATGGGAAACACGCAGGTAACGCCGATCAGTCCGGCCACACCACCGTTTATTAGCTTGGCAGGCAAACTGATCTGTTTGTCAGCCATTTATCTGGGTCCCTGTACTTCTTCAGCGTGTGTGTGTGTGTTTAAGGCGTCAGTGTGCGCGTCTTTGCAGATTTCTCCGAGACTTTTTGGTTTTGTGATTTGGGATCTCAGTCCATTCGCCTTCTTGTGCCAGATATCTGAAAGACTTGGGAAGAGAGGGAATGATTGAGTCAGTGTTTTTATGATACAGGTGTCATCTCTCACTGTTTGACTCTAGGAATTCTTCACACTGGACTCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387916 False 1141 lncRNA 0.40 6 2306959 2316097
TU387918 False 1018 lncRNA 0.46 4 2310230 2316097
TU387920 True 636 lncRNA 0.43 3 2312831 2316097

Neighbor

gene id symbol gene type direction distance location
CI01000127_02195670_02218131 NA coding upstream 88180 2195495 ~ 2218779 (+)
CI01000127_02186896_02189070 NA coding upstream 117188 2186801 ~ 2189771 (+)
CI01000127_02104870_02106881 NA coding upstream 199782 2104870 ~ 2107177 (+)
CI01000127_02075266_02086856 EPS8L2 coding upstream 219484 2075266 ~ 2087475 (+)
CI01000127_02036889_02038557 NA coding upstream 267438 2036889 ~ 2039521 (+)
CI01000127_02352702_02353332 NA coding downstream 36605 2348712 ~ 2353593 (+)
CI01000127_02443481_02466467 MYO5C coding downstream 126801 2442898 ~ 2466969 (+)
CI01000127_02467913_02475731 GNB5, GNB5A coding downstream 151816 2467913 ~ 2476306 (+)
CI01000127_02477517_02488780 AP4E1 coding downstream 161420 2477517 ~ 2489109 (+)
CI01000127_02532996_02543896 DRD4A coding downstream 216899 2532996 ~ 2543950 (+)
G340889 NA non-coding upstream 7257 2298101 ~ 2299702 (+)
G340836 NA non-coding upstream 10619 2203340 ~ 2296340 (+)
G340800 NA non-coding upstream 153684 2150640 ~ 2153275 (+)
G340789 NA non-coding upstream 189665 2044950 ~ 2117294 (+)
G340895 NA non-coding downstream 3032 2319129 ~ 2319452 (+)
G340896 NA non-coding downstream 3476 2319573 ~ 2319855 (+)
G340897 NA non-coding downstream 3970 2320067 ~ 2320327 (+)
G340834 NA non-coding downstream 23540 2339637 ~ 2342955 (+)
G340487 NA other upstream 1182809 988203 ~ 1124150 (+)
G340421 NA other upstream 1471916 834385 ~ 835043 (+)
G340122 NA other upstream 1548569 756845 ~ 758390 (+)
CI01000127_00328606_00381628 ZNF609A other upstream 1947718 328474 ~ 381628 (+)
G340939 NA other downstream 174461 2490558 ~ 2512877 (+)

Expression


Co-expression Network