XLOC_011424 (ankrd1a)


Basic Information

Item Value
gene id XLOC_011424
gene name ankrd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23462972 ~ 23472265 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022727
GGCAGCTGAACAGGCAACACCGATCACTTGGGGACTCTAACTACTCTAATTAACTACAGAGAAAAAAGAGGACTGCATCTCTCACCACTGACAACCTTAtagcaaaacacacacagaccgagagctgaagacaaactcctgatcatagacaTGGGGCTGCTGCGTGTTGAAGAGCTGGTCACCGGGAAGAGAGGCGAGGGAAGGGTGGGAGAAAGTGCTTGTGCAGAGGTGTTTGCTGCTGGAGAATATGAGACCAGCATCATCCAGGAGAAGCAGGATGGCATTCACACACAACAGGACCTGAATGACACCACCCAGAATGACACCAAACCAAGTGAACTGAAGCCAAAACTTAATgttgacCGGTCCGGACATCTAAAACTAGAAACTGTGGAAGACCTCTTCAATATTTTGGAACTGAGAAAGAGGAGAAAGGAAAGGAAGATTCAGATGTTAAAGAAAGAGCCAGAGCCTGATATCTTGCCTGAAACAGTGGACCAGGGGTTGTTTCTCAAAGCTGTCACAGAAAATAAACTGCCTGTAGTGGAGAAATATTTAGTGGATGGTGGAGACCCCAATGCCTGTGATCATtttAAGCGCTCAGCTCTGCATAAAGCCAGTGCACAAGGTCACACAGAGATCATGCAGAAGCTCCTGGAGAGTGGAGCATCCATGGATCAGAAAGATAAGCTGGATGCCACAGCTGTGCACTGGGCCTGCAGAGGTGGAAGCCTGCCTGCCCTGGAGCTGCTTCTCAATAAAGGAGCCAAATTCAACTCCAGAGACAAGCTATCCAGCACTCCACTCCATGTTGCAGTTCGGACGGGACATTATGAATGTGCTGAGCATCTCATTCACTGTGGAGCTGATGTAAATGCTAAAGACAGGgACGGAGACACACCAATGCACGATGCAGTGAGAATAAACAGATTTAAAATGATTAGACTGCTGATGATGTACGGGGCTAGTCTAAATGCCAAAAACAATGATGGAAAGACGCCAATGGAGACTCTGCTGTCTTGGCAAAAAGGTGTAAAAAACATTCTAAATAACCTTAATGAATGTGAAGCTCCAAAGTCAGATGAACAACTTTTCAGCATTTGATGCACTGAAGGGTTTCAGAtgttctttccttttttctttctttctttcttgcttgaTGAACAATAAAAATTGAATATTACTTTGCAATTTACATAATTATGACGCTAATTGCTGGCGATGGAGCGTCTGAAATATTGATGAGgttatttaaatattgtaaatattgttttctcGCTTGATTTTGAGAGGAACAAATCTTCAGGGAgtggcacaagacatcaacatgtttgtgtgcttttaagtgtatttatttttatttaatattaatttaatttcttgTGACTGCATTTGAAAAATGTCCATGACTGTTTGATTTTACAGGAAAATGTCTAGACAGATTTGAGACTGAACTATATAAGTGTGCAGAAATGGAACCGAATGTGAATGCGGGTCTGAGAATGTTTATTGTGATGGATATCATTAATGTAAATGATTTGTAATTTTGGACAGGATTTGTGAAAGACTTTAGTACAGGGTAAATGGACATCCATTATGAAATGTACATTGAAtaatgtgttttgtatttttttaaacactaaaagaAATTAAACTGTCTTTtatttcaaaaa
>TCONS_00022728
aTGGGGCTGCTGCGTGTTGAAGAGCTGGTCACCGGGAAGAGAGGCGAGGGAAGGGTGGGAGAAAGTGCTTGTGCAGAGGTGTTTGCTGCTGGAGAATATGAGACCAGCATCATCCAGGAGAAGCAGGATGGCATTCACACACAACAGGACCTGAATGACACCACCCAGAATGACACCAAACCAAGTGAACTGAAGCCAAAACTTAATgttgacCGGTCCGGACATCTAAAACTAGAAACTGTGGAAGACCTCTTCAATATTTTGGAACTGAGAAAGAGGAGAAAGGAAAGGAAGATTCAGATGTTAAAGAAAGAGCCAGAGCCTGATATCTTGCCTGAAACAGTGGACCAGGGGTTGTTTCTCAAAGCTGTCACAGAAAATAAACTGCCTGTAGTGGAGAAATATTTAGTGGATGGTGGAGACCCCAATGCCTGTGATCATtttAAGCGCTCAGCTCTGCATAAAGCCAGTGCACAAGGTCACACAGAGATCATGCAGAAGCTCCTGGAGAGTGGAGCATCCATGGATCAGAAAGATAAGCTGGATGCCACAGCTGTGCACTGGGCCTGCAGAGGTGGAAGCCTGCCTGCCCTGGAGCTGCTTCTCAATAAAGGAGCCAAATTCAACTCCAGAGACAAGCTATCCAGCACTCCACTCCATGTTGCAGTTCGGACGGGACATTATGAATGTGCTGAGCATCTCATTCACTGTGGAGCTGATGTAAATGCTAAAGACAGGgACGGAGACACACCAATGCACGATGCAGTGAGAATAAACAGATTTAAAATGATTAGACTGCTGATGATGTACGGGGCTAGTCTAAATGCCAAAAACAATGATGGAAAGACGCCAATGGAGACTCTGCTGTCTTGGCAAAAAGGTGTAAAAAACATTCTAAATAACCTTAATGAATGTGAATCCTCCTAA

Function

symbol description
ankrd1a Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart; myotome; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in congenital structural myopathy; dilated cardiomyopathy; hypertrophic cardiomyopathy; nemaline myopathy; and spinal muscular atrophy. Orthologous to human ANKRD1 (ankyrin repeat domain 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100405-1 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart; myotome; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in congenital structural myopathy; dilated cardiomyopathy; hypertrophic cardiomyopathy; nemaline myopathy; and spinal muscular atrophy. Orthologous to human ANKRD1 (ankyrin repeat domain 1).

Ensembl:

ensembl_id ENSDARG00000075263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022727 False 1673 mRNA 0.41 9 23462972 23469936
TCONS_00022728 True 927 mRNA 0.47 10 23463122 23472265

Neighbor

gene id symbol gene type direction distance location
XLOC_011423 NA coding upstream 51987 23409695 ~ 23410985 (+)
XLOC_011422 NA coding upstream 58784 23403122 ~ 23404188 (+)
XLOC_011421 AL929195.2 coding upstream 75026 23387806 ~ 23387946 (+)
XLOC_011420 AL929195.6 coding upstream 79233 23383599 ~ 23383739 (+)
XLOC_011419 AL929195.10 coding upstream 106482 23356350 ~ 23356490 (+)
XLOC_011426 zgc:65997 coding downstream 76852 23549117 ~ 23552068 (+)
XLOC_011427 pank1a coding downstream 82667 23554932 ~ 23575465 (+)
XLOC_011428 dre-mir-107b coding downstream 100865 23573130 ~ 23573215 (+)
XLOC_011429 slc16a12a coding downstream 106051 23578316 ~ 23596969 (+)
XLOC_011430 SGMS1 coding downstream 257452 23729717 ~ 23765068 (+)
XLOC_011433 NA non-coding downstream 348021 23820286 ~ 23824866 (+)
XLOC_011434 NA non-coding downstream 433536 23905801 ~ 23919315 (+)
XLOC_011440 NA non-coding downstream 547155 24019420 ~ 24022462 (+)
XLOC_011444 mdh1ab non-coding downstream 967267 24439532 ~ 24444402 (+)

Expression


Co-expression Network