XLOC_011505


Basic Information

Item Value
gene id XLOC_011505
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27968484 ~ 27972404 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024700
gccgaaataaaacaaattagactttctcagaaaaaaaatatattatcagacatactgtgaaaatttccctgctctgttaaacgtcatttgaaagatatttaaaagataaaataaaattcaaaagggggctaataattctgactttaactgtatatcacaTCCAGTTTAATAAATAACTTCACAGCACTATAAAATGCCAGTTGATGAAATGATCTTCAGCAGTTCACAGATGCAACATATCAAacttcttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatattatttcatagtTATTTCATTATAGAACGAAATGTTTAATAAGGTATCGTGAACTAATGTTGAACAAATGTTTTACAGCATTGTTTGagttaaatgttataaataaactacagttCATTGTTGATTCATCTTAGTTCATACTGTGTTCGCTGATTTAAACACCttgatatataaaaatgtaaaagtatacaGAATGTGGAAATTAAAACCAGATCTAGATCAATGCTGTAAATTGTTTGTGATTGGTTGTTTATAATAACGATAACAAATTAGACCAACTAATGTTGTAAATTTAAATCTCACTAAAACAAGTACTGGGCAGTTTACTGGTCATTGTTAAAGGTCTAAGTGCACATTTCAAGGGTATGTGCATGAGTTCCTCATTTCGAagaattgcaaaagaacaaatttCCTGTGTGGAAATCTATTTAGGACAAAATCTAACCCACAGAAATTCTCCTCGCAGATTTACTTCACTAAAAGAAAGGCAGTACAATAAATATTTGTTGTCACAGTGGCATGAGGCACAAATCAAACGACCTCTTCTTTTATAAAGTGCAATTCATATGACAAATAATCCAGACTCCAAAGTAACATCAATATCCTCCTACGTGATGGATAGTGAAGCTATTTGACAGGAAATAGACTACATCAGCACTAAAATAACCAATGACAGCTATCTTCTTATCACCTCTAGCTTTCTTCAGGTCAACCACCAACATCCTTTTTATTCACATGTGCCTTATTCTTACTCAACCATGTCTTCTGATAACATCATGTTTTCAATATTCTTATGGCAATAATAAACACCACAACATATTTATGGAGAATACAAATCCTTTAACACATAGCACATTTTTCTACCCGTTTAGATATTAAGATCAATTTCACCAAGACTAGTGCAGACAAGTTCGTGGCATTGTTTTACCATCACACATTCACCCTTATGTTGTTCTAAGCCTATATGACTGTCATTATTCTGTGGAACTGTTAGTAATGTTAGTAATATTGTTATACAACTAATATTGTTATACAagtttgtaatgtcattaaaatgatgTTAGACAGTAAATGatgaaacacttttatttttgggtCAAGTATCAGAATCAACTCTGGTAAGAGTTTAATAGttcattatataaattatgtacATCTTAAATAATTATGCTTAAAATTATTAGACGTTTAAATGAGTTGTTAACACACATCATACATCATAACTCAACTCTTGTGATTGGCAGTTACTAGAATGCATTGACATTGGTTTGTAAAGATTTACATGCAGCTTTAGtgcagggtgtctgcagggtcttaaaaatattaaaagttgataagtTAATTTAGAGGCccttaaaaagtgtttaaaagtcttaaatgctattttacaaggtATTACATTTTGCATTAGCATGCTAAAGcttgcctgaatttaatctggGAGTATTGGAATGTTGTGTAGCTTATGAAATCGATCAAGTCCTGCTAGATTTGACTTCACACTGCTTTGTTTTCTGCAGTAAGCAGGCCAACACTATAATTCCTGCAGCTTTTTTTAATCAGTATATGAATAacgttttaatttaaaatttgtttctTACAGTCAGCATTTAGTAAATATGCTGTAAATTAAAATGTGGCCAATGTTACTGGTTAAAACCTAATGTGGTGATGAGGTCTTCAATTGtattaaaagtctttaaaaaccTCTTCAATGTATTGAATTTTCCTCTCTGATCTCAGTATATAGCCTGTAGAGGACATTCAAAAAACCCACAAGAGCATGTTCACTTACTTTTATGATGTATGGATGCCCATTTTGAAGCAAAGCTGGAAAAAAATCAGGAATTTACTATAACTTAGTTTGTGTTCTCCTAAAATAAGTAAGGCGAATAGATTGACGTATGactttcacttttgggtgaaatTCCACTGAAACTACAAACAGTCTGAACAGGACTCTGACCAAGTGTTTCCAAAGTCATTGCACTCAAACAGCCATCTCTGAAACACCTCTCGGCAGTATGCTcaagcattctgtttgaatggggaaacatcaaattctccaaaactgcttgtcaagcttatgattacatttcatattaggaatcacaagtaaaattaaacaacaactgtctctttagtttttttctaaacatccaaatcaaacaaaatctgcagaaactcatgtctggttcgagcccctcccccggagactagtcagtctatagtgatcaataattggctcctgtactagaaggcgggcttttttcgccatatagcgatcgatgattgtctcctgtactagaaggcgggctttattcgccccATTGACCACTagacttttccccattcaaaaagatacgagtgacatgtcttgtgtattctatagtctttggtattTCCCAGCTATGCTTTCTCTTCATCTACAGCATTGACAATGCTCTGATGTCTACTCTTCAGTGATATACCTGTGCTTAACGTGTAACGTGAGCAGTTTTTCCTATTCTTCATCTTTGTGAAATGATTTTCGAGGTACTTGCGAAATTTTGTGGTAGCGAAGCAATACACCAATGGGTCTAGGAGACAGTTGATCCCCATAAGCATGAGGGTGATCTGATGGGCATCGTTTAAGGTTTGGTGAGTCCATGTGGACCAATACTTCTTCAGTTGCAGCACTGACAAAACCCAGGGACCTTGCACCACATGATGGGGTAGGAAACAGATTACAAACACGCCAATGACGGCACACAACATCCTCAAAGCTCTTCGTTTGGTCCCGCCAGGACGTCGTCCTGTGCTGGCTCGAGGCTGACTGATGGGTTGAGACAGAAGAGCTCGAGCGATGGAGATGTTGCAGATAATCACCATTAAGAAAACAAGGAAGAACAAGCCAATAATGCTGAATAAGTTGAGGAATCGATGCTGAAAGGATGAAAGCCCAGATGAGCACTGAGATGATCGCTCCACGTTTCCAGCAGTCAGAAGAGGCTGCCTTTAGGGGTTTGGTAACAGCCCAGTAACGGTTAATGCTGATGACAGTGAGGAATAGAATAGAGCCATAGGtgttaataaagaaaaatgtgcCTGTGATACGACAGAAGGCTTCTGTGGATCTCCAGTGACCTTCATGCATGTAGTAGTCAATCCAGAACGGTAGAGCAGACACAAACAACAGGTCTGCGACAGTCAAGTTGGTCATGTAGATCCGAATCTCATTCATGGCTTTAGACTCCCGCATGCGGTGAAGCACATAGAGAGCATAGCAGTTGGCTATCAACCCCAAGACGAAGACCACACCATAGAAAATGGGAAAGAGAGTGTAACGGAACCTTGAATCGATGATTTCAGTGTCGTTGGTATTTTCGGTCCATTTAGTAGACGACATGTTTTCCATCCTGGCTATCTGCAAAGAAAGCAGACTGACAAAACAACATACAATTACATTAGATTTCACCCAATATTTTcgatgtcattcattcattcattttctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024700 True 3811 lncRNA 0.36 2 27968484 27972404

Neighbor

gene id symbol gene type direction distance location
XLOC_011504 qkia coding upstream 154349 27723490 ~ 27814135 (+)
XLOC_011503 pacrg coding upstream 261741 27545183 ~ 27706743 (+)
XLOC_011502 ctsl.1 coding upstream 507163 27456804 ~ 27461321 (+)
XLOC_011501 vgll2b coding upstream 520957 27434626 ~ 27447527 (+)
XLOC_011500 NA coding upstream 560018 27400492 ~ 27408466 (+)
XLOC_011506 luzp1 coding downstream 33359 28005763 ~ 28071945 (+)
XLOC_011507 AL844186.1 coding downstream 100658 28073062 ~ 28078964 (+)
XLOC_011508 tmem30b coding downstream 130083 28102487 ~ 28111225 (+)
XLOC_011509 NA coding downstream 244044 28216448 ~ 28292143 (+)
XLOC_011510 mdga2a coding downstream 367734 28340138 ~ 28564070 (+)
XLOC_011489 NA non-coding upstream 1360308 26607335 ~ 26608176 (+)
XLOC_011473 NA non-coding upstream 2670718 25295460 ~ 25297766 (+)
XLOC_011469 CT737185.1 non-coding upstream 2905197 25063171 ~ 25063287 (+)
XLOC_011464 CR388164.2 non-coding upstream 3159409 24808035 ~ 24809075 (+)
XLOC_011515 NA non-coding downstream 849969 28822373 ~ 28832712 (+)
XLOC_011517 NA non-coding downstream 1049556 29021960 ~ 29077842 (+)
XLOC_011521 CT027582.1 non-coding downstream 1750947 29723351 ~ 29728743 (+)
XLOC_011525 CR628334.1 non-coding downstream 2524320 30496724 ~ 30496840 (+)

Expression


Co-expression Network