CI01000136_00117448_00133110


Basic Information

Item Value
gene id CI01000136_00117448_00133110
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000136
NCBI id null
chromosome length 2054048
location 117014 ~ 134788 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000136_00117448_00133110.mRNA
AAACCCTACACCTTAACCTGACATCGAGAGCTGATCCTGAATCAGGTGCTTCGAATGAACAGTAACCAGAGCTGCACTAAAGCCCAGTCATTCATCTTGCCTTCGAGGCAGCCGCCATCTCAGCGGTCACGGGATGAATTTCACAGATAAAGAGCAACCGACTGTTTCTCCTCGCTTTCAAGTAGAAAGACAAACAAAAGCACATGGAGGCTTGCATGAGAAAAAGATGAACAATGAGGCATCTCAATGCAAGCTTGTTAAAATTTGGCAAGAAGAGGAGAACTGAGATGTAGTGGAAAACGCATTTCGATGGGATGAATGAGAAACGTTACCCTTCACGTTAGGGGGATTATTTTCTAGTATGAGTCACATTTGGGTAAAGCTTCTTAATAAAAATATGGGCCTACCATCTATGAGGCGCTTGACATGTAATTTGGCTCTTGTTTTTTAAACAAATCCAGTTCCTTTCAGTGCTATCTTGACCTTTGAACCTTTCATACAGGGCAGCAAGCCATTTCTGAGGCTGGAGAAACCCAATCGATCAGTTCAGATGTGTTATGCGATTAACATAATGTCGACATGCTGCCTTGCTGTTGTCCAAGATACGATTTAGCCATCGATGGATTGGTCATTCATTACAGGAACCTGCGAGTGAAAGGCCAGCGGTCGTCTCTAAACATGAGTGACACTCGTCTGTGTGTAGTCAGAGATGGCTCGTGTGACGGGGTCCCGGACCACCACGATCAGCTTGGTGTGGCGGGACATGGCGTAGATCCGGGCCGGAGCCTCGCGGGTCACAAAGTAGCTTGGTGTTTTCTCCATGGTGATCTGGCCCTCCAGGGTCTTAGGCATCAGGTCCCTATGGAGAGAGAGAAAGGAAAGGGGGTTAAGATGGAGCACCTGCAAAGCACCAACTCTCTGTGCGCTACAGGATTTTTCAAGATCACAGAGCTGAAACTATGTGCGAAAAATCCCTGTTTTGCAAGGCGAGGAGAGAGAAGGCTGTGGAGAGCTCTTGAGCAGAACGTGTGCCTCAAGTGCCTCGCTGGCATACAGCGCACGCTGCCACTGGAGCAGGGCTTTAAAGTCTTGGAGGGATCAGAGAAACACAGCCGTACCTGTACTTTGGTTCTGAAGAGCAAGTCAAAACAGACTCAACTTTGGAACACCTGTGCGTGCATCTTTGATAGACATCTCCTAAGCGCTGAATCATTTCATGACTCAATAGTGTTTTTGACCTTCTCAAAGTTCTGTAGCTCTAGTTTGAAGCTTGAAGCAGCTAATTTTGACATCAAGCGACCACTGGAACATTACTCAGTGAGATCAGGGTCATTTCTTTACCGTGTCTGGAGAGCATGCCGGGAAATATGGATTCTGTCTTCAATGGAGGCCGTGTGGCTACATCTGAGCAGGGGGCTTTGGTTTTGGGAAGAAGACTGGTCTGCTTTAGAGTGTCAAGGGCAGAAAAATATATTTAAGTCTCCCTGCAGTGCTGTATATATAAAGACATTCGACATAAACGGGAGGTTCCTGCTGAGGGCGGCCATGTTATTTTGCTTTTCTCTGGAGGAGACTGTAGCTTCTCAATGGCAGACCACCACAGTGGGCCTCTACTGTCTGCCTCTCCCCAGGCCATCCCTTTCACAATTAGCCAGTGTGTACCCGGTTGGGGGTGGCCTTATGTGGGCACTGAGGCCTACAACAGCCCCGCCTCTGATGGGGGAACCAAAGCTCAATGTGGGGCCCGGCTCTAATATGGGATACAAGGAGAGAAGACACGTACGAAAGGGTCATTATGTACGCCCTTCTACAATTACACACATCATATTAGAGACAAAATGTGTGGAAAAACAAAGAGAAGCCAAACTTTGGTTTGATCTCATCCGCAACCACTTAGACAATGCGGTCCCTGCTTTGTACAAGCAGGAAGGAGGGGGTCACTGGCCACAGCGTCCGTATGGGTCACCTACATGGTGGCGTGAACACCCCATGGAGTGTAGTTACAAAAGCAGAGGCATCCATCCAGAACTAGCCATTCCATGGATGGAAGTGCTCATCTGGACAAGGTGGCAGGGGGTCGTAGCCCTCCAAGCACTTCAGAACTTTCAAGTGACATGCTTCCGAGAACGTTCCCTGGTCCAACAGCGGAACGGGATTTTCTGCGGAGCATTTCGCTCTTACAGAACAATGCTCCACTTGTCCTTTTGATGGTCGGCAGTTACGGACCATGTTGTCTAATGGCTGCTATTCAGAAAACACACCCTTAATCTCAGGATAGACTCGGGGATTGCACACTAAAGAGTGAACTGCATTTTCCTACTACATACCTTTTTAGCAGAGGAAAGAAAGCCTGACCTTCAAACACAGACTAGAAAAGATGCATAGAAGAAATGGAGACTAAACATTACCAGTTTTATGAAAATTACTGTGGGTTGACTACCAAAAAGGAAGAGTTGACTACAAAAACTGCTCTGGTAGAGTTAAAAATTATGTAACACTAAGTCAAATGCAGCACCAGGGCCTCCACAACGTTCACCGTTCCAGCTGGGACCCTGTCTGTCTGGGTGGGTGGGATTTTTGAGAAGCCAACTTAACTGCTTATTAAATCATCAGAGTCTCCGCAAAAAAAGAAAGAAAATAAA
>TU395893
GAATGTTCAGTATTTAATTATCTAGAAACATCTGTTCCATTTTTCTCTTTCATGGTGTAAAATTAATTTTTGATACCACAAAATACTTGGTTTACATGTCTTCCTCATCATTTGTACATAAAGCTCATTTCTAGTCTATTTATTTGTGTTATACTCAGAGTAAGACAAACATTTCTAACATCTGGATATCTCTATGAGGTTGAATAAAACTCAACCAATAAACAGATGCATCAGCACACACTGCCTGACCATGAGCGAAGATATGAAACTTTGCTCATAACAACTTTTGACAGATCACAATTCATATGCAGTTCACATGTAATCAGTGACAAACTTTAACCAGAAAATGCCTGAGCAATAAAGCTCATCGTTGACATCCTGGGACAGTCGTTTCTGAACCAAAAACAAAAAAACAATTGCACTGGTAAAAATCACAGGAGGCCCCATGGGCGAGCATTTGATGACAATTTGCTTGACCCTATTTCACTTCCATAATCCAACTGATTTGCTTTTAAATGCAATGTGAATGCAAGAAACACACTTTGATGATTTGATTACAGTTGTAAGAGAAATTTCACATTGTTTCCCTTTTGCCTCCTCAGAACATTTGATTACTTGATGAATTGAATAAAGTAGGAAAAATGCCCTGGGAAATTTCCCTCAGATTCCACCGCTTAATTCAGACTCGAAGGCCAACAAGAATCGTATGGCTGTGTTCTCACAGCTGATAAATATTACAATCCCCTCTCTAAACGAAAGGAAGTTGGCTTAGCATAGCACAGGACTGGTTCGAGGCACAGCATGTTGTAAACCAAAACGAAAATCAGTGAGCTGATACAACGCTTTCATTTTGTTTGTTTTCTTTTCAAATGCATCCATCCATAAACAAACAATTAGACAAACATTTCCCTCAGCATTTCATTTTCCAGTATATTAAATAGGGGTGAAAAAGGTGAAGTTTCAGTACATTCGTAATGCTATATTCTGCTTTAAAACCTCCCGGTGACCTCACCCCTTGAATTCTGGTCCAGGTACAGCATCTCAGCCTGATGTTAAAGCTGAGGCATAAAAAGTGAAATGTTGGCTTCATGCACCCTTCAAACCCTACACCTTAACCTGACATCGAGAGCTGATCCTGAATCAGGTGCTTCGAATGAACAGTAACCAGAGCTGCACTAAAGCCCAGTCATTCATCTTGCCTTCGAGGCAGCCGCCATCTCAGCGGTCACGGGATGAATTTCACAGATAAAGAGCAACCGACTGTTTCTCCTCGCTTTCAAGTAGAAAGACAAACAAAAGCACATGGAGGCTTGCATGAGAAAAAGATGAACAATGAGGCATCTCAATGCAAGCTTGTTAAAATTTGGCAAGAAGAGGAGAACTGAGATGTAGTGGAAAACGCATTTCGATGGGATGAATGAGAAACGTTACCCTTCACGTTAGGGGGATTATTTTCTAGTATGAGTCACATTTGGGTAAAGCTTCTTAATAAAAATATGGGCCTACCATCTATGAGGCGCTTGACATGTAATTTGGCTCTTGTTTTTTAAACAAATCCAGTTCCTTTCAGTGCTATCTTGACCTTTGAACCTTTCATACAGGGCAGCAAGCCATTTCTGAGGCTGGAGAAACCCAATCGATCAGTTCAGATGTGTTATGCGATTAACATAATGTCGACATGCTGCCTTGCTGTTGTCCAAGATACGATTTAGCCATCGATGGATTGGTCATTCATTACAGGAACCTGCGAGTGAAAGGCCAGCGGTCGTCTCTAAACATGAGTGACACTGTAAGTAGCAATTAGGGTTATTGATCGTCATGTTATTGAGTAAAGGGACACATCGAATCAGCTCACTTGCTTATCAGCCGAACATAGTAGGACTCGGGCCAATATGGAGTGTAATGAAACATGAAATGCGATCAGAGAGTGAAATATAGTTCATTACCCTCTGTCACGAAGGTAGATATGGACATTCAGAACTGAATGAATCGCAAATGTCGCTGTTGGTTTGTAAATGCACGATACCCGTAACAAACTGTTTTTTTTTTTTTTTTTGTCTGTCAAACCATTTCCAAATTCGGAAGCACCATTAAATTCATTGTGAATGGAAACACACACAGCAAATCAAAAATGTGGAATGTCGGTGGTGAGACTAGAGTTGGGCCGGACGTTATGTACAATATGGTTAGGCAGCTTAGTGAATTAATTGCTTAGAAATTAAAAATAAATTATTATAAAATAGATTTCTGTACATTTTACATATATATAGCAATCATCTCAATGTCTTTTTGCCATTTCAAATACACAGAAAAAGAAAGAAAACAACGGGTCCTCCATTCACGGTTAATCCCAACCAAAGTTATGCCCAGTCATCTGGTAGAACTTCATGTTGAAAGGCCTGTAGAAGTCTCGAAGTCTCTGCACGACCTCAGGGTCGATGTTTGGGTGGGTCCGCCCTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000136_00117448_00133110.mRNA False 2642 mRNA 0.47 10 117014 133689
TU395893 True 2463 lncRNA 0.39 1 132326 134788

Neighbor

gene id symbol gene type direction distance location
CI01000136_00012060_00014460 NA coding downstream 101449 11814 ~ 15565 (-)
CI01000136_00261536_00270931 PMP22B, PMP22 coding upstream 126765 260454 ~ 271519 (-)
CI01000136_00283083_00288092 TEKT3 coding upstream 149354 283043 ~ 288489 (-)
CI01000136_00330405_00331394 CDC42EP4B, CDC42EP4 coding upstream 195556 329245 ~ 331513 (-)
CI01000136_00357437_00448405 SDK2 coding upstream 223739 357428 ~ 448459 (-)
CI01000136_01339600_01342904 NA coding upstream 1204037 1337726 ~ 1342904 (-)
G347822 NA non-coding downstream 10280 102473 ~ 106734 (-)
G347824 NA non-coding downstream 51177 64570 ~ 65837 (-)
G347811 NA non-coding downstream 75218 41527 ~ 41796 (-)
G347929 NA non-coding upstream 156051 289740 ~ 289965 (-)
G347900 NA non-coding upstream 161668 295357 ~ 297004 (-)
G347904 NA non-coding upstream 179232 312921 ~ 313745 (-)
G347950 NA non-coding upstream 306982 440671 ~ 887473 (-)
G348010 NA non-coding upstream 718457 852146 ~ 857924 (-)
G348257 NA other upstream 1073985 1207674 ~ 1207964 (-)
G348732 NA other upstream 1633761 1767450 ~ 1782356 (-)
G348891 NA other upstream 1796304 1929993 ~ 1930356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1677832 LOC106589627 non-coding NC_048584.1 CM023238.2 25808033 ~ 25811985 (+)
bowfin (Amia calva) G43438 NA non-coding CM030125.1 CM030125.1 27270028 ~ 27417787 (+)