CI01000136_00261536_00270931 (PMP22B, PMP22)


Basic Information

Item Value
gene id CI01000136_00261536_00270931
gene name PMP22B, PMP22
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000136
NCBI id null
chromosome length 2054048
location 260454 ~ 271519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000136_00261536_00270931.mRNA
AGTAGCCTAATTCTTGCCTTCGGGATAAAGTGCTCTGGCTCATCCATACGCTGATATCTGACTTTGTAGAGGGACACGCGTGACTTTATTATTGCTTAATTATTTAGAGCCGTTTTGCACTTCGTTGTAACTCTCCAAAATTGATGGTGAAAAATGGTGTACATTATGCCAACTAACTGCGTTCTGAGTGATTGCAATTTTCGGGCGAACATTCTAGTTAATAATTAGACTTTAGAAAGTTTTAATAAATCTCACAATAAAAAGACAAGGTTATATTAAAAGACGTAAGCTACTATGTAATAATCAGCTTTTAATGCACTGGTTAAAACTTTGTTGTTGTTGTTAATAAAAACGCCTGATATATTATATTAATTATATTATATTTTATTATATCAACTCAAACTCAAAAAATATAATTTATTAATATTTTATTAATAAAACCTTTACATATTTATATATAACAACCTAAATAGTAATAGTAAATTCCAAAAATAATGTTAAAGGGCTATATTATAACTTATAACACATCACTGTTGTATTTTATCAATAAAATGTTTCGGTGTTTGTACAGAACCGTAAGGAAACATCATGCTGCTCCTCTTACTGGGAATCGTCGTCTTGCATGTGGCAGCACTGGTTCTGCTCCTCGTGTCCACTATAGTCAGTGCATGGGCTGTTAACCCCAACAGCAGTTCAGACCTCTGGACAAACTGCACCACAATCAATAATGACTACAGATGTGACCCTGCCGACACTGGAGTTTGGATCCAGGCAGTCCAAGCCCTCATGATCCTGTCAATCATCTTCAGCTTCCTGTCTCTCTTCCTGTTCTTCTGCCAGCTCTTTACGCTTCAGAAGGGTGGACGCTTCTTCCTTACTGGAGCATTCCAGATCTTTGCTAGTCTTTTTGTTATGAGTGGAGCAATCATTTATACGGTAATGAACTCCGAGTGGGTCCCTGAGACAGAGTTCTATGGCTTTTCCTACATCTTGGCCTGGGTAGCCTTCCCTCTGGCGTTCATAAGTGGGTTAATCTACGTCATCTTAAGAAAACGGGAGTGAGGTGGCACCGCACTCTTGTGGCCGCTACCTGGAAATACAGCTTTGAAGCCAAAGTATCGCACTGCATCCACTGAGAAGTGAAATCACGCAGTATCTTCACCCAGGGGTCAGTCAAAATCAACCCCACTGCCACCCGAAAAGACATATTCAATACTGTCATCATTTGAAGATGTATATAGTATCTATGGTTTAAAACCTATTTATAACACTTTTTACATATATGTACATAGTATTTTATGTTTGCTCTGTTGACAAAGAACCTCTGAAGAGCTTTTCTTTTAGCTAATTAAGTGCCTAGAGTGTGTGTTTGTCGCAGAAACGTGCATCATTATTAGCCATAATGTGTGTTTGTTTCATTTTCTTTCCTTATACGGCCAAAAATACTTATAAAAAGGTTTTTGATGTATTTTAACCAAAGCGCATGTATTAAATTATAGGGACAATGAAAGGAAGTGTTTTCAATGAAGCTGCATTGAGAATTCATAGATGAAGTAAATTAAAGGGATAGTTCACACAAAAATGAAAATTCTGTCATCATTTACTCAGCCTCAAGTTGTTCCAAACCAGTATGAATTTCTTTCTTCTGCTGTACACAAAAGATGATATTTTGAAGAATGTTGGTAACCAAACAGTTGATGGTCCCCATTGACTTCCATAGTATTTTTTTTCCATACTATGGAAGTCAGTGGGGCCCATCAACTGTTGGGTTAGCCATCTTTTTTTAAAATATCTTCTCATGTTCATCAAAAGAAAGAAATTCCTACAGGTTTGGAACAAATTGAGGGTGAGTAAATGATGACAGAATTTTTAGTTTTGGATGAACTGTCCTTTTAAATACCACGGTTAGACTGGCGGTGTTGAAAGCTTTTTTTTTTTTTTTTTTTAATAGTTTCTTTGTTTTCCAACAAAAAATGGTGCTATGTATTTACCATTCCTTTCACTAATAGCCATTTAGCCTTTATTTAGAAGGACATAACATGACTGAAAGTCAAAAACAGAATGCCATTGAATATATTGTGCTTGTGCCTGTAACACAATGCTGTATATACAGTACTCACCAAAAAGGTTCATTTTATAATAAA

Function

symbol description
pmp22b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in notochord; otic placode; otic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies. Orthologous to human PMP22 (peripheral myelin protein 22).
pmp22 Predicted to enable cytoskeletal motor activity. Involved in bleb assembly and cell death. Located in plasma membrane. Implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies.

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K19289 PMP22; peripheral myelin protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000136_00261536_00270931.mRNA True 2144 mRNA 0.36 4 260454 271519

Neighbor

gene id symbol gene type direction distance location
CI01000136_00117448_00133110 NA coding downstream 126765 117014 ~ 134788 (-)
CI01000136_00012060_00014460 NA coding downstream 244889 11814 ~ 15565 (-)
CI01000136_00283083_00288092 TEKT3 coding upstream 11524 283043 ~ 288489 (-)
CI01000136_00330405_00331394 CDC42EP4B, CDC42EP4 coding upstream 57726 329245 ~ 331513 (-)
CI01000136_00357437_00448405 SDK2 coding upstream 85909 357428 ~ 448459 (-)
CI01000136_01339600_01342904 NA coding upstream 1066207 1337726 ~ 1342904 (-)
CI01000136_01611161_01611888 NA coding upstream 1339130 1610649 ~ 1612568 (-)
G347822 NA non-coding downstream 153720 102473 ~ 106734 (-)
G347824 NA non-coding downstream 194617 64570 ~ 65837 (-)
G347811 NA non-coding downstream 218658 41527 ~ 41796 (-)
G347929 NA non-coding upstream 18221 289740 ~ 289965 (-)
G347900 NA non-coding upstream 23838 295357 ~ 297004 (-)
G347904 NA non-coding upstream 41402 312921 ~ 313745 (-)
G347950 NA non-coding upstream 169152 440671 ~ 887473 (-)
G348010 NA non-coding upstream 580627 852146 ~ 857924 (-)
G348257 NA other upstream 936155 1207674 ~ 1207964 (-)
G348732 NA other upstream 1495931 1767450 ~ 1782356 (-)
G348891 NA other upstream 1658474 1929993 ~ 1930356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G210964 NA non-coding NC_053132.1 CM020929.1 8969083 ~ 8971699 (+)
bowfin (Amia calva) AMCG00013288 NA coding CM030125.1 CM030125.1 27130164 ~ 27140599 (+)