CI01000136_00330405_00331394 (CDC42EP4B, CDC42EP4)


Basic Information

Item Value
gene id CI01000136_00330405_00331394
gene name CDC42EP4B, CDC42EP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000136
NCBI id null
chromosome length 2054048
location 329245 ~ 331513 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000136_00330405_00331394.mRNA
AGAGTTTTCATCGTGACCACTGTCCTGGACCTACACTGTCAAAGGAAAGAGTGACCCATCTCTTGGCGAGAAAAGACTGGTGATTTTATTTTTCTTTGGACAGTATTTGAGAAGTCACCATGCCTATTCTGAAGCAGCTTGTATCCTCGTCCTCCCAGTCAAAGCGGCGCTCTCGTGCTGACCTGACTGCAGAGATGATCAGCGCACCTCTGGGAGACTTCCGTCACACTATGCATGTGGGACGAGGAGGCGACGCGTTTGGTGACACCTCCTTTCTTAGCAGCCGTTCAGGGGAGCCACCAAGGGAGCCGGAGGTACAGCAGAGCTCACCTAAACAGAGCCTCCTTTCCCGTACGTTCCGAAGCAGCAAGCGCTCCCAGTCGGTCAATCGTGACAAGCCTGACAAATCCAAACTGGCGCCCCCCAGTGGCTCGCCAAGTTATGTAAAAAATGCAATCTCGCTGCCATATTTGAATGATGACAATGCAGGACGAGGTACTGATATCCACCTTCCCAAGAGCGTGTCTTCAAGTCCTTTAAAGAACGTTCCGGAAGTTGATGGAAAGCCGCTTAATGGAGCTGCAGCGCCCACTGTATCAGACCTGGAGCTGGACGAGAGGAATTTTGGTGAGCTGACCGACTTGCGTCCATCAGTTCCTTACACCGGAGGCATGAAACATGCTGAGTCCATCATGTCCTTCCACATCGATCTGGGACCCTCTATGCTGGGCGACATCCTGAGCGTGATGGACAAGAAGGGCTTAGATGATGACGATCTGGGATTCGAAGAGGGGAAGAGTAGCGAGGGGCGCAGCTCGCCGCCCCAGAGTCCTCCCAATGAAGTGGAGGAAGAGGACCCCCTTCCTCCGATCCGACCCCCACGCCAAAGGCCGGGCACCAACCCTTACACTCCAGAGCTCCAAACCAGGAACCATCAACACCTGGACAGCTGTTCGGTCTCAAGTTCAGGGTCCACCGCGCTGGAGGAAAAACTCCACAATCAGATTTATGAGGGGAATATGGATGACATCAAGTACAGCTCACCTCGTGTGCAAGACGACACGGACTTCTCCTACATGGATGATGATGACGATGAGATTAGGGTGTAAAATGAACTGTAAATTACCAGAACAGTCTTTGCAAAGACTAAAAGAAGTGGTGAAGGTGGGTTGTGGTCGATTGGTGGATGCAAAGCTTGTACATTGACGTGGAGGACTGATTTTATAATGGAGATGAAAGGGAAAACGTATGTTTTAGCCCTTGCTAAATGCTTTTTCACTACAATTCCTAGTTCAGGTAAACAAACCCTCTGTTACTAGCGACTTTCGCCAGAGCCGCCACAGCTGAGAGAGGAATGTGCTTGTGTTTGCATATGCCGAGGCAAGGGAATTCCATTTCAAATGGTAATTAGTCTCGTGAGTATCATTAATGAATTCCAGTGTTGACCACTGGGAATGCTGATACAGGAGGTTTGCGTGGAACCAAGCCTCATATTCTCCCATGATCGACGCAGTACTCAGATGAAGCTCGCCTTATGCCTTTGGACTCGGAAAATGCTTCCAAACTAATGCCAACAGTCTTAAGTTTCCTGTTTTACAGTTTTTGATTCCATCTTTAAGTTATATCCTAAATTTTGCCTTGTACACAAAACTGTATTGATGTAAATGTTGAATTAATGATTGGAATACCATAAACGTGTTTGGAGGTTCAACAGAACGTTTTATCTCTGGCATATGTTACCTTTTTACTGTCGAGAGTTGTTTATGTAGTAGATCTGGACTTTGTCATGTGGTCCATGTGTGTTTAAGGGGATTTCCTGTCAGGTCACATGAAATTCTCAATCTTGGAGACTTTAGATTGATGGGATACAGAAACCGAAAGCAGGGGAGACATTGCTTTACTTGGAGGCAGTAGAATCAGACTAAGTGGAACCAATGATGACTTGTCAATTTTGTGTGTGTGAATGAGGATTGATGTCAAGAGGGCTGAGAAGTGTGCTATTTGATTATCATTGTATAGGCTCGGAGATGAAGAGGTAGCTCTCTTATTCAGGGTCTAGTGTAGTGCCTCGAAACCATGCTCATGAGCAGAAGTGGCTATAGAGGGTTTTCATCTCTGAATGACTCTTGTAGTTCTTTGTATTTTTGTATTTAGGTTTTCAAGAGAGATCAACACAACGTGATAAGTCTGTAACTTGTATAGCCACTCTGTGAGTTAGTGCCATACCCTCTGCCTCGGTTAAACATAGACAGAAATGTACTTCATTAAA

Function

symbol description
cdc42ep4b Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Orthologous to human CDC42EP4 (CDC42 effector protein 4).
cdc42ep4 Enables RNA binding activity. Involved in positive regulation of pseudopodium assembly and regulation of cell shape. Located in adherens junction; cytoskeleton; and plasma membrane.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000136_00330405_00331394.mRNA True 2269 mRNA 0.47 1 329245 331513

Neighbor

gene id symbol gene type direction distance location
CI01000136_00283083_00288092 TEKT3 coding downstream 40756 283043 ~ 288489 (-)
CI01000136_00261536_00270931 PMP22B, PMP22 coding downstream 57726 260454 ~ 271519 (-)
CI01000136_00117448_00133110 NA coding downstream 195556 117014 ~ 134788 (-)
CI01000136_00012060_00014460 NA coding downstream 313680 11814 ~ 15565 (-)
CI01000136_00357437_00448405 SDK2 coding upstream 25915 357428 ~ 448459 (-)
CI01000136_01339600_01342904 NA coding upstream 1006213 1337726 ~ 1342904 (-)
CI01000136_01611161_01611888 NA coding upstream 1279136 1610649 ~ 1612568 (-)
CI01000136_01961834_02044196 NA coding upstream 1630081 1961594 ~ 2044196 (-)
G347904 NA non-coding downstream 15500 312921 ~ 313745 (-)
G347900 NA non-coding downstream 32241 295357 ~ 297004 (-)
G347929 NA non-coding downstream 39280 289740 ~ 289965 (-)
G347822 NA non-coding downstream 222511 102473 ~ 106734 (-)
G347950 NA non-coding upstream 109158 440671 ~ 887473 (-)
G348010 NA non-coding upstream 520633 852146 ~ 857924 (-)
G348083 NA non-coding upstream 561605 893118 ~ 893327 (-)
G348089 NA non-coding upstream 565729 897242 ~ 899810 (-)
G348123 NA non-coding upstream 601917 933430 ~ 933652 (-)
G348257 NA other upstream 876161 1207674 ~ 1207964 (-)
G348732 NA other upstream 1435937 1767450 ~ 1782356 (-)
G348891 NA other upstream 1598480 1929993 ~ 1930356 (-)

Expression


Co-expression Network