G347824


Basic Information

Item Value
gene id G347824
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000136
NCBI id null
chromosome length 2054048
location 64570 ~ 65837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU395916
CACACACACACACACACACACACACAATGAAGTGGTCTAATACATTTGCTAGCATGTTCCAACTGGATGTCAGGTCGCTGGGCTTTATATGTGTTTAGTCCAGTCACGTTCTGCTGAGTGTGCAGTTATTTCACGAATGTGCACGGGGGGGACTGACCTGATTGATGGAATTGGCTGTACATGAAGAGAGACCTGTTCCGACCGTAGCCATCAAAAAAGTGACAGGGTCAAAGGGCACAGGAGCCATGGCATAGCCAGCAGCTGCCGTAGTAACCACAAGAGCTGTTAATTTAAGTTTGGAGAGCCGTGCGTAAATCCCTGGTAAATCACTGTATTCAACCCTCAACTCCTTCCACTGCCGAGCCTCCAAGCGGGCAGCTTTGGTCGCCTCTGGTTCAACCTGGATGTTTTTTGAGTCACATGGCGGCTCCACAGTGCCTGGCTCAGGCTTTAAGGCTGGGACCTGCTGAACCTGTCTGACCACCGAATCATCTCGATCATCCAGTGCAGAAGCAACAGGGTCCTGCTTGGGTCTCGCTCTCTGGCAGAGACCGCCGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU395916 True 560 lncRNA 0.52 2 64570 65837

Neighbor

gene id symbol gene type direction distance location
CI01000136_00012060_00014460 NA coding downstream 49005 11814 ~ 15565 (-)
CI01000136_00117448_00133110 NA coding upstream 51177 117014 ~ 134788 (-)
CI01000136_00261536_00270931 PMP22B, PMP22 coding upstream 194617 260454 ~ 271519 (-)
CI01000136_00283083_00288092 TEKT3 coding upstream 217206 283043 ~ 288489 (-)
CI01000136_00330405_00331394 CDC42EP4B, CDC42EP4 coding upstream 263408 329245 ~ 331513 (-)
CI01000136_00357437_00448405 SDK2 coding upstream 291591 357428 ~ 448459 (-)
G347811 NA non-coding downstream 22774 41527 ~ 41796 (-)
G347822 NA non-coding upstream 36636 102473 ~ 106734 (-)
G347929 NA non-coding upstream 223903 289740 ~ 289965 (-)
G347900 NA non-coding upstream 229520 295357 ~ 297004 (-)
G347904 NA non-coding upstream 247084 312921 ~ 313745 (-)
G348257 NA other upstream 1141837 1207674 ~ 1207964 (-)
G348732 NA other upstream 1701613 1767450 ~ 1782356 (-)
G348891 NA other upstream 1864156 1929993 ~ 1930356 (-)

Expression


Co-expression Network